Evidence map›Paper›PMID 26794006›Full record

ArticleScientific reports2016

Functional mutagenesis screens reveal the 'cap structure' formation in disulfide-bridge free TASK channels.

Matthias Goldstein, Susanne Rinné, Aytug K Kiper, David Ramírez, Michael F Netter, Daniel Bustos, Beatriz Ortiz-Bonnin, Wendy González, Niels Decher

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

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  9. International journal of molecular sciences · 2019
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  10. N-glycosylation-dependent regulation of hKMolecular biology of the cell · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Matthias GoldsteinInstitute for Physiology and Pathophysiology, University of Marburg, 35037 Marburg, Germany.
Susanne RinnéInstitute for Physiology and Pathophysiology, University of Marburg, 35037 Marburg, Germany.
Aytug K KiperInstitute for Physiology and Pathophysiology, University of Marburg, 35037 Marburg, Germany.
David RamírezCenter for Bioinformatics and Molecular Simulation, University of Talca, Talca, Chile.
Michael F NetterInstitute for Physiology and Pathophysiology, University of Marburg, 35037 Marburg, Germany.
Daniel BustosCenter for Bioinformatics and Molecular Simulation, University of Talca, Talca, Chile.
Beatriz Ortiz-BonninInstitute for Physiology and Pathophysiology, University of Marburg, 35037 Marburg, Germany.
Wendy GonzálezCenter for Bioinformatics and Molecular Simulation, University of Talca, Talca, Chile.
Niels DecherInstitute for Physiology and Pathophysiology, University of Marburg, 35037 Marburg, Germany.
Philipps University of Marburg · DEUniversity of Talca · CL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Two-pore-domain potassium (K2P) channels have a large extracellular cap structure formed by two M1-P1 linkers, containing a cysteine for dimerization. However, this cysteine is not present in the TASK-1/3/5 subfamily. The functional role of the cap is poorly understood and it remained unclear whether K2P channels assemble in the domain-swapped orientation or not. Functional alanine-mutagenesis screens of TASK-1 and TRAAK were used to build an in silico model of the TASK-1 cap. According to our data the cap structure of disulfide-bridge free TASK channels is similar to that of other K2P channels and is most likely assembled in the domain-swapped orientation. As the conserved cysteine is not essential for functional expression of all K2P channels tested, we propose that hydrophobic residues at the inner leaflets of the cap domains can interact with each other and that this way of stabilizing the cap is most likely conserved among K2P channels.

Indexed as

Genetic TestingAlanineAmino Acid SequenceAnimalsCell MembraneConserved SequenceCysteineDisulfidesElectric ConductivityGlycosylationHumansHydrophobic and Hydrophilic InteractionsModels, MolecularMutagenesisMutant ProteinsMutationAlanineCysteineDisulfidesKCNK4 protein, humanMutant ProteinsNerve Tissue ProteinsPotassium ChannelsPotassium Channels, Tandem Pore Domainpotassium channel subfamily K member 3Protein Subunits

Identifiers

PMID26794006
PMCPMC4726246
OpenAlexW2414227614

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.