Evidence map›Paper›PMID 26790750›Full record

ArticleNature communications2016

Biochemical characterization of predicted Precambrian RuBisCO.

Patrick M Shih, Alessandro Occhialini, Jeffrey C Cameron, P John Andralojc, Martin A J Parry, Cheryl A Kerfeld

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
8.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 144 citations in OpenAlex.

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  7. Rubisco is slow across the tree of life.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  8. In vivo directed evolution of an ultrafast Rubisco from a semianaerobic environment imparts oxygen resistance.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  9. Review
  10. Applications of ancestral sequence reconstruction for understanding the evolution of plant specialized metabolism.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
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  14. Multisubstrate specificity shaped the complex evolution of the aminotransferase family across the tree of life.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  15. Primordial magnetotaxis in putative giant paleoproterozoic magnetofossils.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  16. Rubisco is evolving for improved catalytic efficiency and COProceedings of the National Academy of Sciences of the United States of America · 2024
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  17. Article
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  19. Insights into the biological control of the carbon isotope signatures of ancient aquatic organisms.Proceedings of the National Academy of Sciences of the United States of America · 2023
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  20. Carbon isotope fractionation by an ancestral rubisco suggests that biological proxies for COProceedings of the National Academy of Sciences of the United States of America · 2023
    Article

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Patrick M ShihDepartment of Plant and Microbial Biology, University of California, Berkeley, California 94720-3102, USA.
Alessandro OcchialiniDepartment of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Herts AL5 2JQ, UK.
Jeffrey C CameronDepartment of Plant and Microbial Biology, University of California, Berkeley, California 94720-3102, USA.
P John AndralojcDepartment of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Herts AL5 2JQ, UK.
Martin A J ParryDepartment of Plant Biology and Crop Science, Rothamsted Research, Harpenden, Herts AL5 2JQ, UK.
Cheryl A KerfeldDepartment of Plant and Microbial Biology, University of California, Berkeley, California 94720-3102, USA.
Rothamsted Research · GBUniversity of California, Berkeley · US

Funding

Biotechnology and Biological Sciences Research Council BB/1024488/1Biotechnology and Biological Sciences Research Council BB/I002545/1Biotechnology and Biological Sciences Research Council BB/I017372/1Biotechnology and Biological Sciences Research Council BB/I024488/1Biotechnology and Biological Sciences Research Council BB/J/00426X/1
6 · The paper itself

Abstract

The antiquity and global abundance of the enzyme, RuBisCO, attests to the crucial and longstanding role it has played in the biogeochemical cycles of Earth over billions of years. The counterproductive oxygenase activity of RuBisCO has persisted over billions of years of evolution, despite its competition with the carboxylase activity necessary for carbon fixation, yet hypotheses regarding the selective pressures governing RuBisCO evolution have been limited to speculation. Here we report the resurrection and biochemical characterization of ancestral RuBisCOs, dating back to over one billion years ago (Gyr ago). Our findings provide an ancient point of reference revealing divergent evolutionary paths taken by eukaryotic homologues towards improved specificity for CO2, versus the evolutionary emphasis on increased rates of carboxylation observed in bacterial homologues. Consistent with these distinctions, in vivo analysis reveals the propensity of ancestral RuBisCO to be encapsulated into modern-day carboxysomes, bacterial organelles central to the cyanobacterial CO2 concentrating mechanism.

Indexed as

Amino Acid SequenceBacteriaBacterial ProteinsEvolution, MolecularKineticsModels, MolecularMolecular Sequence DataPhylogenyRibulose-Bisphosphate CarboxylaseSequence AlignmentBacterial ProteinsRibulose-Bisphosphate Carboxylase

Identifiers

PMID26790750
PMCPMC4735906
OpenAlexW2335924208

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.