Evidence map›Paper›PMID 26789728›Full record

ArticlePloS one2016

Changes in Colonic Bile Acid Composition following Fecal Microbiota Transplantation Are Sufficient to Control Clostridium difficile Germination and Growth.

Alexa R Weingarden, Peter I Dosa, Erin DeWinter, Clifford J Steer, Megan K Shaughnessy, James R Johnson, Alexander Khoruts, Michael J Sadowsky

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 97 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
97citing papers in PubMed, 3 pooled it
12.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

97 citing papers in PubMed, 3 syntheses or guidelines pooled it, 152 citations in OpenAlex.

  1. Pooled it
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  9. SER-109, an Investigational Microbiome Drug to Reduce Recurrence After Clostridioides difficile Infection: Lessons Learned From a Phase 2 Trial.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2021
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  14. Lipidomics, Microbiota, and IntestinalInternational journal of molecular sciences · 2025
    Review
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37 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Alexa R WeingardenDepartment of Microbiology and Immunology, University of Minnesota, St. Paul, Minnesota, United States of America.
Peter I DosaDepartment of Medicinal Chemistry-Institute for Therapeutics Discovery and Development, University of Minnesota, Minneapolis, Minnesota, United States of America.
Erin DeWinterThe BioTechnology Institute, University of Minnesota, St. Paul, Minnesota, United States of America.
Clifford J SteerDepartment of Medicine, University of Minnesota, Minneapolis, Minnesota, United States of America.
Megan K ShaughnessyDepartment of Medicine, Division of Infectious Diseases, University of Minnesota, Minneapolis, Minnesota, United States of America.
James R JohnsonDepartment of Medicine, Division of Infectious Diseases, University of Minnesota, Minneapolis, Minnesota, United States of America.
Alexander KhorutsThe BioTechnology Institute, University of Minnesota, St. Paul, Minnesota, United States of America.
Michael J SadowskyThe BioTechnology Institute, University of Minnesota, St. Paul, Minnesota, United States of America.
Biotechnology Institute · USUniversity of Minnesota · USMinneapolis VA Health Care System · US

Funding

University of Minnesota Clinical and Translational Science Institute (UMN CTSI)UL1TR000114 · NCATS · UNIVERSITY OF MINNESOTA · PI BLAZAR, BRUCE R · 2012 to 2015
$35.0M
Infectious Disease Training in Clinical InvestigationT32AI055433 · NIAID · UNIVERSITY OF MINNESOTA TWIN CITIES · PI David R Boulware · 2003 to 2026
$6.1M
Identification of Intestinal Bacteria Protective against C. Difficile ColitisR21AI091907 · NIAID · UNIVERSITY OF MINNESOTA · PI KHORUTS, ALEXANDER, SADOWSKY, MICHAEL JAY · 2011 to 2012
$415k
The role of bile acid metabolism recovery in treatment of C. difficile infectionR21AI114722 · NIAID · UNIVERSITY OF MINNESOTA · PI CHEN, CHI, KHORUTS, ALEXANDER · 2015 to 2016
$414k
NCATS NIH HHS UL1 TR000114NCATS NIH HHS UL1TR00114NIAID NIH HHS 1R21-AI114722-01NIAID NIH HHS 2T32AI055433-06A1NIAID NIH HHS R21 AI091907NIAID NIH HHS R21AI-091907NIAID NIH HHS R21 AI114722NIAID NIH HHS T32 AI055433
6 · The paper itself

Abstract

Fecal microbiota transplantation (FMT) is a highly effective therapy for recurrent Clostridium difficile infection (R-CDI), but its mechanisms remain poorly understood. Emerging evidence suggests that gut bile acids have significant influence on the physiology of C. difficile, and therefore on patient susceptibility to recurrent infection. We analyzed spore germination of 10 clinical C. difficile isolates exposed to combinations of bile acids present in patient feces before and after FMT. Bile acids at concentrations found in patients' feces prior to FMT induced germination of C. difficile, although with variable potency across different strains. However, bile acids at concentrations found in patients after FMT did not induce germination and inhibited vegetative growth of all C. difficile strains. Sequencing of the newly identified germinant receptor in C. difficile, CspC, revealed a possible correspondence of variation in germination responses across isolates with mutations in this receptor. This may be related to interstrain variability in spore germination and vegetative growth in response to bile acids seen in this and other studies. These results support the idea that intra-colonic bile acids play a key mechanistic role in the success of FMT, and suggests that novel therapeutic alternatives for treatment of R-CDI may be developed by targeted manipulation of bile acid composition in the colon.

Indexed as

Fecal Microbiota TransplantationBile Acids and SaltsBiological TherapyClostridioides difficileColonEnterocolitis, PseudomembranousFecesHumansBile Acids and Salts

Identifiers

PMID26789728
PMCPMC4720481
OpenAlexW2336367423

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.