Evidence map›Paper›PMID 26788535›Full record

ArticleMolecular genetics & genomic medicine2016

The dentin phosphoprotein repeat region and inherited defects of dentin.

Jie Yang, Kazuhiko Kawasaki, Moses Lee, Bryan M Reid, Stephanie M Nunez, Murim Choi, Figen Seymen, Mine Koruyucu, Yelda Kasimoglu, Ninna Estrella-Yuson and 3 more

Open access · goldAbstract read
In one paragraph

Article in Molecular genetics & genomic medicine, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 25 citations in OpenAlex.

  1. The genetics of non-syndromic dentinogenesis imperfecta: a systematic review.European archives of paediatric dentistry : official journal of the European Academy of Paediatric Dentistry · 2025
    Pooled it
  2. Beyond the diagnosis: UnravelingThe Japanese dental science review · 2026
    Review
  3. Article
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  5. Review
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  7. Dentin defects caused by a DsppScientific reports · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 7 institutions in 6 countries.

Jie YangDepartment of Biologic and Materials SciencesUniversity of Michigan School of Dentistry1210 Eisenhower PlaceAnn ArborMichigan; Department of Pediatric DentistrySchool and Hospital of StomatologyPeking University22 South AvenueZhongguancun Haidian DistrictBeijing100081China.
Kazuhiko KawasakiDepartment of Anthropology Pennsylvania State University University Park Pennsylvania 16802.
Moses LeeDepartment of Biomedical Sciences Seoul National University College of Medicine 275-1 Yongon-dong, Chongno-gu Seoul 110-768 Korea.
Bryan M ReidDepartment of Biologic and Materials Sciences University of Michigan School of Dentistry 1210 Eisenhower Place Ann Arbor Michigan.
Stephanie M NunezDepartment of Biologic and Materials Sciences University of Michigan School of Dentistry 1210 Eisenhower Place Ann Arbor Michigan.
Murim ChoiDepartment of Biomedical Sciences Seoul National University College of Medicine 275-1 Yongon-dong, Chongno-gu Seoul 110-768 Korea.
Figen SeymenDepartment of Pedodontics Faculty of Dentistry Istanbul University Istanbul Turkey.
Mine KoruyucuDepartment of Pedodontics Faculty of Dentistry Istanbul University Istanbul Turkey.
Yelda KasimogluDepartment of Pedodontics Faculty of Dentistry Istanbul University Istanbul Turkey.
Ninna Estrella-YusonDepartment of Paediatric Dentistry Women's and Children's Hospital 72 King William Road North Adelaide South Australia 5006 Australia.
Brent P J LinDepartment of Pediatric Dentistry School of Dentistry University of California San Francisco California.
James P SimmerDepartment of Biologic and Materials Sciences University of Michigan School of Dentistry 1210 Eisenhower Place Ann Arbor Michigan.
Jan C-C HuDepartment of Biologic and Materials Sciences University of Michigan School of Dentistry 1210 Eisenhower Place Ann Arbor Michigan.
University of Michigan–Ann Arbor · USIstanbul University · TRNew Generation University College · ETBoston Children's Hospital · USPeking University · CNPennsylvania State University · USUniversity of California, San Francisco · US

Funding

Yale Center for Mendelian GenomicsUM1HG006504 · NHGRI · YALE UNIVERSITY · PI GERSTEIN, MARK BENDER, GUNEL, MURAT · 2016 to 2020
$14.8M
Yale Center for Mendelian DisordersU54HG006504 · NHGRI · YALE UNIVERSITY · PI GERSTEIN, MARK BENDER, GUNEL, MURAT · 2012 to 2015
$11.0M
Proteomics and Genetics of Enamel and DentinR01DE015846 · NIDCR · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HU, JAN CHING CHUN · 2004 to 2019
$5.7M
Therapeutic/Mechanistic Role of Ape1 in Germ Cell TumorsR01CA094025 · NCI · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI KELLEY, MARK R. · 2003 to 2007
$1.1M
Genetic Mechanisms of Amelogenesis ImperfectaR56DE015846 · NIDCR · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HU, JAN CHING CHUN · 2021 to 2021
$402k
NCI NIH HHS R01 CA094025NHGRI NIH HHS U54 HG006504NHGRI NIH HHS UM1 HG006504NIDCR NIH HHS R01 DE015846NIDCR NIH HHS R56 DE015846
6 · The paper itself

Abstract

Nonsyndromic dentin defects classified as type II dentin dysplasia and types II and III dentinogenesis imperfecta are caused by mutations in DSPP (dentin sialophosphoprotein). Most reported disease-causing DSPP mutations occur within the repetitive DPP (dentin phosphoprotein) coding sequence. We characterized the DPP sequences of five probands with inherited dentin defects using single molecule real-time (SMRT) DNA sequencing. Eight of the 10 sequences matched previously reported DPP length haplotypes and two were novel. Alignment with known DPP sequences showed 32 indels arranged in 36 different patterns. Sixteen of the 32 indels were not represented in more than one haplotype. The 25 haplotypes with confirmed indels were aligned to generate a tree that describes how the length variations might have evolved. Some indels were independently generated in multiple lines. A previously reported disease-causing DSPP mutation in Family 1 was confirmed and its position clarified (c.3135delC; p.Ser1045Argfs*269). A novel frameshift mutation (c.3504_3508dup; p.Asp1170Alafs*146) caused the dentin defects in Family 2. A COL1A2 (c.2027G>A or p.Gly676Asp) missense mutation, discovered by whole-exome sequencing, caused the dentin defects in Family 3. We conclude that SMRT sequencing characterizes the DPP repeat region without cloning and can improve our understanding of normal and pathological length variations in DSPP alleles.

Indexed as

Mutationsosteogenesis imperfectaSMRT technologytoothwhole‐exome sequencing

Identifiers

PMID26788535
PMCPMC4707025
OpenAlexW2134901897

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.