Evidence map›Paper›PMID 26788422›Full record

ArticlePeerJ2016

Solid phase extraction and metabolic profiling of exudates from living copepods.

Erik Selander, Jan Heuschele, Göran M Nylund, Georg Pohnert, Henrik Pavia, Oda Bjærke, Larisa A Pender-Healy, Peter Tiselius, Thomas Kiørboe

Abstract read
In one paragraph

Article in PeerJ, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Erik SelanderDepartment of Marine Sciences, University of Gothenburg,Göteborg, Sweden; Centre for Ocean Life, National Institute of Aquatic Resources, Technical University of Denmark, Copenhagen, Denmark.
Jan HeuscheleCentre for Ocean Life, National Institute of Aquatic Resources, Technical University of Denmark , Copenhagen , Denmark.
Göran M NylundDepartment of Marine Sciences, University of Gothenburg, Göteborg , Sweden.
Georg PohnertInstitute for Inorganic and Analytical Chemistry, Friedrich Schiller University , Jena , Germany.
Henrik PaviaDepartment of Marine Sciences, University of Gothenburg, Göteborg , Sweden.
Oda BjærkeDepartment of Biosciences, University of Oslo , Oslo , Norway.
Larisa A Pender-HealySchool of Biology, Georgia Institute of Technology , Atlanta, GA , USA.
Peter TiseliusDepartment of Biological and Environmental Sciences, University of Gothenburg , Göteborg , Sweden.
Thomas KiørboeCentre for Ocean Life, National Institute of Aquatic Resources, Technical University of Denmark , Copenhagen , Denmark.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Copepods are ubiquitous in aquatic habitats. They exude bioactive compounds that mediate mate finding or induce defensive traits in prey organisms. However, little is known about the chemical nature of the copepod exometabolome that contributes to the chemical landscape in pelagic habitats. Here we describe the development of a closed loop solid phase extraction setup that allows for extraction of exuded metabolites from live copepods. We captured exudates from male and female Temora longicornis and analyzed the content with high resolution LC-MS. Chemometric methods revealed 87 compounds that constitute a specific chemical pattern either qualitatively or quantitatively indicating copepod presence. The majority of the compounds were present in both female and male exudates, but nine compounds were mainly or exclusively present in female exudates and hence potential pheromone candidates. Copepodamide G, known to induce defensive responses in phytoplankton, was among the ten compounds of highest relative abundance in both male and female extracts. The presence of copepodamide G shows that the method can be used to capture and analyze chemical signals from living source organisms. We conclude that solid phase extraction in combination with metabolic profiling of exudates is a useful tool to develop our understanding of the chemical interplay between pelagic organisms.

Indexed as

Copepod exudateExometabolomeInfochemicalsMetabolomicsTemora longicornis

Identifiers

PMID26788422
PMCPMC4715450

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.