Evidence map›Paper›PMID 26787901›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Redundant function of DNA ligase 1 and 3 in alternative end-joining during immunoglobulin class switch recombination.

Shahnaz Masani, Li Han, Katheryn Meek, Kefei Yu

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 64 citations in OpenAlex.

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  6. Perspective in the Mechanisms for Repairing Sperm DNA Damage.Reproductive sciences (Thousand Oaks, Calif.) · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Shahnaz MasaniDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824.
Li HanDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824.
Katheryn MeekDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824.
Kefei YuDepartment of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824 yuke@msu.edu.
Michigan State University · US

Funding

Relevant Targets of the DNA Dependent Protein KinaseR01AI048758 · NIAID · MICHIGAN STATE UNIVERSITY · PI MEEK, KATHERYN D · 2000 to 2016
$5.2M
Mechanism of Class Switch RecombinationR56AI081817 · NIAID · MICHIGAN STATE UNIVERSITY · PI YU, KEFEI · 2014 to 2014
$340k
NIAID NIH HHS R01 AI048758NIAID NIH HHS R56 AI081817
6 · The paper itself

Abstract

Nonhomologous end-joining (NHEJ) is the major DNA double-strand break (DSB) repair pathway in mammals and resolves the DSBs generated during both V(D)J recombination in developing lymphocytes and class switch recombination (CSR) in antigen-stimulated B cells. In contrast to the absolute requirement for NHEJ to resolve DSBs associated with V(D)J recombination, DSBs associated with CSR can be resolved in NHEJ-deficient cells (albeit at a reduced level) by a poorly defined alternative end-joining (A-EJ) pathway. Deletion of DNA ligase IV (Lig4), a core component of the NHEJ pathway, reduces CSR efficiency in a mouse B-cell line capable of robust cytokine-stimulated CSR in cell culture. Here, we report that CSR levels are not further reduced by deletion of either of the two remaining DNA ligases (Lig1 and nuclear Lig3) in Lig4(-/-) cells. We conclude that in the absence of Lig4, Lig1, and Lig3 function in a redundant manner in resolving switch region DSBs during CSR.

Indexed as

DNA End-Joining RepairRecombination, GeneticAnimalsCell LineCell NucleusDNA DamageDNA Ligase ATPDNA LigasesImmunoglobulin Class SwitchingMicePoly-ADP-Ribose Binding ProteinsXenopus ProteinsDNA Ligase ATPDNA ligase III alpha protein, XenopusDNA LigasesLig1 protein, mouseLig3 protein, mousePoly-ADP-Ribose Binding ProteinsXenopus Proteinsclass switch recombinationDNA double-strand breakDNA ligaseDNA repairnonhomologous end-joining

Identifiers

PMID26787901
PMCPMC4747719
OpenAlexW2266930450

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.