Evidence map›Paper›PMID 26787892›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Common BRAF(V600E)-directed pathway mediates widespread epigenetic silencing in colorectal cancer and melanoma.

Minggang Fang, Lloyd Hutchinson, April Deng, Michael R Green

Open access · bronzeAbstract readValidation Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 1 pooled it
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 1 synthesis or guideline pooled it, 76 citations in OpenAlex.

  1. Pooled it
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  14. The Current State of Chromatin Immunoprecipitation (ChIP) from FFPE Tissues.International journal of molecular sciences · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Minggang FangHoward Hughes Medical Institute, University of Massachusetts Medical School, Worcester, MA 01605; Department of Molecular, Cell and Cancer Biology, University of Massachusetts Medical School, Worcester, MA 01605;
Lloyd HutchinsonDepartment of Pathology, UMass Memorial Medical Center and University of Massachusetts Medical School, Worcester, MA 01605.
April DengDepartment of Pathology, UMass Memorial Medical Center and University of Massachusetts Medical School, Worcester, MA 01605.
Michael R GreenHoward Hughes Medical Institute, University of Massachusetts Medical School, Worcester, MA 01605; Department of Molecular, Cell and Cancer Biology, University of Massachusetts Medical School, Worcester, MA 01605; michael.green@umassmed.edu.ORCID http://orcid.org/0000-0003-3017-3298
Howard Hughes Medical Institute · USUniversity of Massachusetts Chan Medical School · US

Funding

TRANSCRIPTIONAL ACTIVATION BY THE ADENOVIRUS ELA PROTEINR01GM033977 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI GREEN, MICHAEL R · 1985 to 2013
$3.2M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM033977NIGMS NIH HHS R01GM033977
6 · The paper itself

Abstract

During cancer development, it is well established that many genes, including tumor suppressor genes, are hypermethylated and transcriptionally repressed, a phenomenon referred to as epigenetic silencing. In general, the factors involved in, and the mechanistic basis of, epigenetic silencing during cancer development are not well understood. We have recently described an epigenetic silencing pathway, directed by the oncogenic B-Raf proto-oncogene (BRAF) variant BRAF(V600E), that mediates widespread epigenetic silencing in colorectal cancer (CRC). Notably, the BRAF(V600E) mutation is also present in 50-70% of melanomas. Here, we show that the same pathway we identified in CRC also directs epigenetic silencing of a similar set of genes in BRAF-positive melanoma. In both CRC and melanoma, BRAF(V600E) promotes epigenetic silencing through up-regulation of v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog G (MAFG), a transcriptional repressor with sequence-specific DNA-binding activity. The elevated concentration of MAFG drives DNA binding on the promoter. Promoter-bound MAFG recruits a set of corepressors that includes its heterodimeric partner BTB and CNC homology 1, basic leucine zipper transcription factor 1 (BACH1), the chromatin remodeling factor chromodomain helicase DNA-binding protein 8 (CHD8), and the DNA methyltransferase DNMT3B, resulting in hypermethylation and transcriptional silencing. Our results reveal a common BRAF(V600E)-directed transcriptional regulatory pathway that mediates epigenetic silencing in unrelated solid tumors and provide strong support for an instructive model of oncoprotein-directed epigenetic silencing.

Indexed as

Gene SilencingCell Line, TumorColorectal NeoplasmsDNA MethylationEpigenesis, GeneticHumansMafG Transcription FactorMelanomaProto-Oncogene MasProto-Oncogene Proteins B-rafRepressor ProteinsUp-RegulationBRAF protein, humanMAFG protein, humanMafG Transcription FactorMAS1 protein, humanProto-Oncogene MasProto-Oncogene Proteins B-rafRepressor ProteinsBRAF(V600E)colorectal cancerepigenetic silencingMAFGmelanoma

Identifiers

PMID26787892
PMCPMC4747705
OpenAlexW2254060056

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.