Evidence map›Paper›PMID 26787882›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

PGL germ granule assembly protein is a base-specific, single-stranded RNase.

Scott T Aoki, Aaron M Kershner, Craig A Bingman, Marvin Wickens, Judith Kimble

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. eIF4E assembly intobioRxiv : the preprint server for biology · 2025
    Article
  5. How germ granules promote germ cell fate.Nature reviews. Genetics · 2024
    Review
  6. Review
  7. Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. TOR Signaling inGenetics · 2019
    Review
  14. Review
  15. Review
  16. Article
  17. An effective Caenorhabditis elegans CRISPR training module for high school and undergraduate summer research experiences in molecular biology.Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Scott T AokiDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706;
Aaron M KershnerHoward Hughes Medical Institute, University of Wisconsin-Madison, Madison, WI 53706.
Craig A BingmanDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706;
Marvin WickensDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706;
Judith KimbleDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706; Howard Hughes Medical Institute, University of Wisconsin-Madison, Madison, WI 53706 jekimble@wisc.edu.
University of Wisconsin–Madison · US

Funding

FUNCTION OF POLY(A) AND 3'UTRSR01GM050942 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI WICKENS, MARVIN P. · 1994 to 2020
$8.3M
Partnership for High-Throughput Enabled Biology of the Mitochondrial ProteomeU01GM094622 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI MARKLEY, JOHN LUTE · 2010 to 2014
$7.8M
The Transmembrane Protein CenterU54GM094584 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI FOX, BRIAN G · 2010 to 2014
$4.6M
Enzyme Discovery for Natural Product BiosynthesisU01GM098248 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI PHILLIPS, GEORGE NEAL · 2011 to 2015
$2.8M
The mechanics and dynamics of RNP granulesK99HD081208 · NICHD · UNIVERSITY OF WISCONSIN-MADISON · PI AOKI, SCOTT T · 2015 to 2016
$202k
C. elegans RNA regulatory protein complexes that control germ cell fateF32HD071692 · NICHD · UNIVERSITY OF WISCONSIN-MADISON · PI AOKI, SCOTT T · 2012 to 2014
$176k
Howard Hughes Medical InstituteNICHD NIH HHS F32 HD071692NICHD NIH HHS F32HD071692NICHD NIH HHS K99 HD081208NICHD NIH HHS K99HD081208NIGMS NIH HHS GM094584NIGMS NIH HHS GM094622NIGMS NIH HHS GM098248NIGMS NIH HHS GM50942NIGMS NIH HHS R01 GM050942NIGMS NIH HHS U01 GM094622NIGMS NIH HHS U01 GM098248NIGMS NIH HHS U54 GM094584PHS HHS ACB-12002PHS HHS AGM-12006
6 · The paper itself

Abstract

Cellular RNA-protein (RNP) granules are ubiquitous and have fundamental roles in biology and RNA metabolism, but the molecular basis of their structure, assembly, and function is poorly understood. Using nematode "P-granules" as a paradigm, we focus on the PGL granule scaffold protein to gain molecular insights into RNP granule structure and assembly. We first identify a PGL dimerization domain (DD) and determine its crystal structure. PGL-1 DD has a novel 13 α-helix fold that creates a positively charged channel as a homodimer. We investigate its capacity to bind RNA and discover unexpectedly that PGL-1 DD is a guanosine-specific, single-stranded endonuclease. Discovery of the PGL homodimer, together with previous results, suggests a model in which the PGL DD dimer forms a fundamental building block for P-granule assembly. Discovery of the PGL RNase activity expands the role of RNP granule assembly proteins to include enzymatic activity in addition to their job as structural scaffolds.

Indexed as

Amino Acid SequenceAnimalsCaenorhabditisCrystallography, X-RayCytoplasmic GranulesModels, MolecularMolecular Sequence DataRibonucleasesSequence Homology, Amino AcidSubstrate SpecificityRibonucleasesgerm-cell developmentPGL-1PGL-3P-granulesRNA endonuclease

Identifiers

PMID26787882
PMCPMC4747772
OpenAlexW2288106552

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.