Evidence map›Paper›PMID 26787879›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Enterovirus D68 receptor requirements unveiled by haploid genetics.

Jim Baggen, Hendrik Jan Thibaut, Jacqueline Staring, Lucas T Jae, Yue Liu, Hongbo Guo, Jasper J Slager, Jost W de Bruin, Arno L W van Vliet, Vincent A Blomen and 9 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
9.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 104 citations in OpenAlex.

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10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 2 countries.

Jim BaggenVirology Division, Department of Infectious Diseases and Immunology, Faculty of Veterinary Medicine, Utrecht University, 3584 CL, Utrecht, The Netherlands;
Hendrik Jan ThibautVirology Division, Department of Infectious Diseases and Immunology, Faculty of Veterinary Medicine, Utrecht University, 3584 CL, Utrecht, The Netherlands;
Jacqueline StaringBiochemistry Division, Netherlands Cancer Institute, 1006 BE, Amsterdam, The Netherlands;
Lucas T JaeBiochemistry Division, Netherlands Cancer Institute, 1006 BE, Amsterdam, The Netherlands;
Yue LiuDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907;
Hongbo GuoVirology Division, Department of Infectious Diseases and Immunology, Faculty of Veterinary Medicine, Utrecht University, 3584 CL, Utrecht, The Netherlands;
Jasper J SlagerVirology Division, Department of Infectious Diseases and Immunology, Faculty of Veterinary Medicine, Utrecht University, 3584 CL, Utrecht, The Netherlands;
Jost W de BruinVirology Division, Department of Infectious Diseases and Immunology, Faculty of Veterinary Medicine, Utrecht University, 3584 CL, Utrecht, The Netherlands;
Arno L W van VlietVirology Division, Department of Infectious Diseases and Immunology, Faculty of Veterinary Medicine, Utrecht University, 3584 CL, Utrecht, The Netherlands;
Vincent A BlomenBiochemistry Division, Netherlands Cancer Institute, 1006 BE, Amsterdam, The Netherlands;
Pieter OverduinVirology Division, Centre for Infectious Diseases Research, Diagnostics and Screening, National Institute for Public Health and the Environment, 3720 BA, Bilthoven, The Netherlands;
Ju ShengDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907;
Cornelis A M de HaanVirology Division, Department of Infectious Diseases and Immunology, Faculty of Veterinary Medicine, Utrecht University, 3584 CL, Utrecht, The Netherlands;
Cornelis A M de Haan Xander
Erik de VriesVirology Division, Department of Infectious Diseases and Immunology, Faculty of Veterinary Medicine, Utrecht University, 3584 CL, Utrecht, The Netherlands;
Adam MeijerVirology Division, Centre for Infectious Diseases Research, Diagnostics and Screening, National Institute for Public Health and the Environment, 3720 BA, Bilthoven, The Netherlands;
Michael G RossmannDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907; mr@purdue.edu F.J.M.vanKuppeveld@uu.nl.
Thijn R BrummelkampBiochemistry Division, Netherlands Cancer Institute, 1006 BE, Amsterdam, The Netherlands; Cancer Genomics Centre, 3584 CG, Utrecht, The Netherlands.
Frank J M van KuppeveldVirology Division, Department of Infectious Diseases and Immunology, Faculty of Veterinary Medicine, Utrecht University, 3584 CL, Utrecht, The Netherlands; mr@purdue.edu F.J.M.vanKuppeveld@uu.nl.
Utrecht University · NLPurdue University West Lafayette · USThe Netherlands Cancer Institute · NLNational Institute for Public Health and the Environment · NLOncode Institute · NL

Funding

STRUCTURE OF A SMALL SPHERICAL VIRUSR37AI011219 · NIAID · PURDUE UNIVERSITY WEST LAFAYETTE · PI ROSSMANN, MICHAEL G · 1986 to 2015
$6.6M
STRUCTURE OF A SMALL SPHERICAL VIRUSR01AI011219 · NIAID · PURDUE UNIVERSITY WEST LAFAYETTE · PI KUHN, RICHARD J. · 1985 to 2020
$2.4M
NIAID NIH HHS AI011219NIAID NIH HHS R01 AI011219NIAID NIH HHS R37 AI011219
6 · The paper itself

Abstract

Enterovirus D68 (EV-D68) is an emerging pathogen that can cause severe respiratory disease and is associated with cases of paralysis, especially among children. Heretofore, information on host factor requirements for EV-D68 infection is scarce. Haploid genetic screening is a powerful tool to reveal factors involved in the entry of pathogens. We performed a genome-wide haploid screen with the EV-D68 prototype Fermon strain to obtain a comprehensive overview of cellular factors supporting EV-D68 infection. We identified and confirmed several genes involved in sialic acid (Sia) biosynthesis, transport, and conjugation to be essential for infection. Moreover, by using knockout cell lines and gene reconstitution, we showed that both α2,6- and α2,3-linked Sia can be used as functional cellular EV-D68 receptors. Importantly, the screen did not reveal a specific protein receptor, suggesting that EV-D68 can use multiple redundant sialylated receptors. Upon testing recent clinical strains, we identified strains that showed a similar Sia dependency, whereas others could infect cells lacking surface Sia, indicating they can use an alternative, nonsialylated receptor. Nevertheless, these Sia-independent strains were still able to bind Sia on human erythrocytes, raising the possibility that these viruses can use multiple receptors. Sequence comparison of Sia-dependent and Sia-independent EV-D68 strains showed that many changes occurred near the canyon that might allow alternative receptor binding. Collectively, our findings provide insights into the identity of the EV-D68 receptor and suggest the possible existence of Sia-independent viruses, which are essential for understanding tropism and disease.

Indexed as

AnimalsCell LineEnterovirus D, HumanHaploidyHumansReceptors, VirusReceptors, Virusenterovirus D68haploid genetic screenreceptorsialic acid

Identifiers

PMID26787879
PMCPMC4747778
OpenAlexW2255998354

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.