Evidence map›Paper›PMID 26787545›Full record

ArticleCurrent microbiology2016

Pelagibacterium lixinzhangensis sp. nov., a Novel Member of the Genus Pelagibacterium.

Na Yang, Chaomin Sun

Abstract read
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Article in Current microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Na YangKey Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, People's Republic of China.
Chaomin SunKey Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, People's Republic of China. sunchaomin@qdio.ac.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A Gram-negative, rod shaped and non-spore-forming bacterium, strain H642(T), was isolated from a desert sample collected from Xinjiang province of China, and subjected to a polyphasic taxonomic investigation. Strain H642(T) grew between 20 and 40 °C (optimal 28-37 °C), pH 6.0-10.0 (optimal 7.0-9.0) and at NaCl concentrations between 1.0 and 20.0 % (optimal 2.0-8.0 %). It was positive for catalase, but negative for oxidase. Ubiquinone-10 was present as the major respiratory ubiquinone. The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol, four unknown glycolipids and one unknown lipid. Phylogenetic analysis of the 16S rRNA gene sequence revealed that strain H642(T) belongs to the genus Pelagibacterium. Strain H642(T) was most closely related to Pelagibacterium halotolerans (with 98.4 % similarity), Pelagibacterium nitratireducens (97.3 %) and Pelagibacterium luteolum (96.2 %). DNA-DNA reassociation values between strain H642(T), P. halotolerans B2(T) and P. nitratireducens JLT2005(T) were 38.0 and 25.3 %, respectively. The genomic DNA G + C content of strain H642(T) was determined to be 44.4 mol%. Based on genotypic, chemotaxonomic and phenotypic data, strain H642(T) represents a novel species of the genus Pelagibacterium, for which the name Pelagibacterium lixinzhangensis sp. nov is proposed. The type strain is H642(T) (=CGMCC 1.10230(T)=JCM 16597(T)).

Indexed as

Base CompositionChinaDesert ClimateDNA, BacterialFatty AcidsGeologic SedimentsHyphomicrobiaceaePhylogenyRNA, Ribosomal, 16SSodium ChlorideUbiquinoneDNA, BacterialFatty AcidsRNA, Ribosomal, 16SSodium ChlorideUbiquinoneUbiquinone Q2

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.