ArticleScientific reports2016
A simulation-based breeding design that uses whole-genome prediction in tomato.
Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.
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Who cites it
35 citing papers in PubMed, 96 citations in OpenAlex.
- Advances in genomics-driven genetic decoding and genomic design breeding in tomato.Horticulture research · 2026Article
- On the genetic origins of phenotypes in genome-wide association studies: the SAFE-hBMC bioinformatics · 2026Article
- What metabolomics has taught us about tomato fruit ripening and quality.Journal of experimental botany · 2025Review
- Smart agriculture in Asia.Plant communications · 2025Review
- Optimization of crossing strategy based on the usefulness criterion in interpopulation crosses considering different marker effects among populations.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Article
- Whole-genome resequencing of Japanese large-sized tomato cultivars provides insights into the history of modern breeding.Breeding science · 2024Article
- Prediction accuracy of genomic estimated breeding values for fruit traits in cultivated tomato (Solanum lycopersicum L.).BMC plant biology · 2024Article
- Low-density SNP markers with high prediction accuracy of genomic selection for bacterial wilt resistance in tomato.Frontiers in plant science · 2024Article
- Article
- Genetic architecture of fresh-market tomato yield.BMC plant biology · 2023Article
- Germplasm Screening Using DNA Markers and Genome-Wide Association Study for the Identification of Powdery Mildew Resistance Loci in Tomato.International journal of molecular sciences · 2022Article
- Genetic Behavior of Tomato (Plants (Basel, Switzerland) · 2022Article
- Genotyping-by-Sequencing Based Investigation of Population Structure and Genome Wide Association Studies for Seven Agronomically Important Traits in a Set of 346 Oryza rufipogon Accessions.Rice (New York, N.Y.) · 2022Article
- Next generation sequencing technologies to explore the diversity of germplasm resources: Achievements and trends in tomato.Computational and structural biotechnology journal · 2022Review
- Assessment of Greenhouse Tomato Anthesis Rate Through Metabolomics Using LASSO Regularized Linear Regression Model.Frontiers in molecular biosciences · 2022Article
- Tomato genomic prediction for good performance under high-temperature and identification of loci involved in thermotolerance response.Horticulture research · 2021Article
- Genome-wide association study identifies QTL for eight fruit traits in cultivated tomato (Solanum lycopersicum L.).Horticulture research · 2021Article
- Genomic prediction using a reference population of multiple pure breeds and admixed individuals.Genetics, selection, evolution : GSE · 2021Article
- Review
Corrections and comments
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Authors and funding
14 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Efficient plant breeding methods must be developed in order to increase yields and feed a growing world population, as well as to meet the demands of consumers with diverse preferences who require high-quality foods. We propose a strategy that integrates breeding simulations and phenotype prediction models using genomic information. The validity of this strategy was evaluated by the simultaneous genetic improvement of the yield and flavour of the tomato (Solanum lycopersicum), as an example. Reliable phenotype prediction models for the simulation were constructed from actual genotype and phenotype data. Our simulation predicted that selection for both yield and flavour would eventually result in morphological changes that would increase the total plant biomass and decrease the light extinction coefficient, an essential requirement for these improvements. This simulation-based genome-assisted approach to breeding will help to optimise plant breeding, not only in the tomato but also in other important agricultural crops.
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