Evidence map›Paper›PMID 26787303›Full record

ArticleBMC developmental biology2016

Revisiting in vivo staining with alizarin red S--a valuable approach to analyse zebrafish skeletal mineralization during development and regeneration.

A Bensimon-Brito, J Cardeira, G Dionísio, A Huysseune, M L Cancela, P E Witten

Open access · hybridAbstract read
In one paragraph

Article in BMC developmental biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
7.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 127 citations in OpenAlex.

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  8. Standardization of bone morphometry and mineral density assessments in zebrafish and other small laboratory fishes using X-ray radiography and micro-computed tomography.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2024
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  16. mTORC1 signaling pathway regulates tooth repair.International journal of oral science · 2023
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  19. Fin ray branching is defined by TRAPProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  20. Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

A Bensimon-BritoCentre of Marine Sciences - CCMar, University of Algarve, Campus de Gambelas, Faro, Portugal. bensimonbrito@gmail.com.
J CardeiraCentre of Marine Sciences - CCMar, University of Algarve, Campus de Gambelas, Faro, Portugal. jpgsilva@ualg.pt.
G DionísioCentre of Marine Sciences - CCMar, University of Algarve, Campus de Gambelas, Faro, Portugal. gisela.dionisio@ua.pt.
A HuysseuneEvolutionary Developmental Biology, Biology Department, Ghent University, Ghent, Belgium. ann.huysseune@ugent.be.
M L CancelaCentre of Marine Sciences - CCMar, University of Algarve, Campus de Gambelas, Faro, Portugal. lcancela@ualg.pt.
P E WittenEvolutionary Developmental Biology, Biology Department, Ghent University, Ghent, Belgium. PEckhardWitten@aol.com.
University of Algarve · PTUniversity College Ghent · BEGhent University · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe correct evaluation of mineralization is fundamental for the study of skeletal development, maintenance, and regeneration. Current methods to visualize mineralized tissue in zebrafish rely on: 1) fixed specimens; 2) radiographic and μCT techniques, that are ultimately limited in resolution; or 3) vital stains with fluorochromes that are indistinguishable from the signal of green fluorescent protein (GFP)-labelled cells. Alizarin compounds, either in the form of alizarin red S (ARS) or alizarin complexone (ALC), have long been used to stain the mineralized skeleton in fixed specimens from all vertebrate groups. Recent works have used ARS vital staining in zebrafish and medaka, yet not based on consistent protocols. There is a fundamental concern on whether ARS vital staining, achieved by adding ARS to the water, can affect bone formation in juvenile and adult zebrafish, as ARS has been shown to inhibit skeletal growth and mineralization in mammals.

resultsHere we present a protocol for vital staining of mineralized structures in zebrafish with a low ARS concentration that does not affect bone mineralization, even after repetitive ARS staining events, as confirmed by careful imaging under fluorescent light. Early and late stages of bone development are equally unaffected by this vital staining protocol. From all tested concentrations, 0.01% ARS yielded correct detection of bone calcium deposits without inducing additional stress to fish.

conclusionsThe proposed ARS vital staining protocol can be combined with GFP fluorescence associated with skeletal tissues and thus represents a powerful tool for in vivo monitoring of mineralized structures. We provide examples from wild type and transgenic GFP-expressing zebrafish, for endoskeletal development and dermal fin ray regeneration.

Indexed as

Animal FinsAnimalsAnthraquinonesBone and BonesCalcification, PhysiologicFluorescenceGenes, ReporterGreen Fluorescent ProteinsRegenerationStaining and LabelingTissue FixationZebrafishAlizarin Red SAnthraquinonesGreen Fluorescent Proteins

Identifiers

PMID26787303
PMCPMC4719692
OpenAlexW2270142617

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.