ArticleScientific reports2016
The genome sequence of the outbreeding globe artichoke constructed de novo incorporating a phase-aware low-pass sequencing strategy of F1 progeny.
Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 62 papers.
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Who cites it
62 citing papers in PubMed.
- Chromosome-level genome assembly of Youngia japonica reveals evolutionary dynamics underlying adaptation in a synanthropic Asteraceae species.BMC plant biology · 2026Article
- Phylogenomic synteny reveals paleohexaploid-derived genomic blocks across Asteraceae.Proceedings of the National Academy of Sciences of the United States of America · 2026Article
- Unravelling the molecular mechanisms of vegetative-to-reproductive transition in Cynara cardunculus by RNA-Seq analysis.Plant molecular biology · 2026Article
- Assessing Functional Conservation AmongstPlants (Basel, Switzerland) · 2025Article
- Chromosome-scale Reference Genome and RAD-based Genetic Map of Yellow Starthistle (Centaurea solstitialis) Reveal Putative Structural Variation and QTL Associated With Invader Traits.Genome biology and evolution · 2024Article
- High-quality haplotype-resolved chromosome assembly provides evolutionary insights and targeted steviol glycosides (SGs) biosynthesis in Stevia rebaudiana Bertoni.Plant biotechnology journal · 2024Article
- Biotechnological frontiers in harnessing allelopathy for sustainable crop production.Functional & integrative genomics · 2024Review
- The Carthamus tinctorius L. genome sequence provides insights into synthesis of unsaturated fatty acids.BMC genomics · 2024Article
- The Dark Side of the pollen: BSA-seq identified genomic regions linked to male sterility in globe artichoke.BMC plant biology · 2024Article
- Integrated Proteomics and Metabolomics of Safflower Petal Wilting and Seed Development.Biomolecules · 2024Article
- Asteraceae genome database: a comprehensive platform for Asteraceae genomics.Frontiers in plant science · 2024Article
- Structural and expression analysis of polyphenol oxidases potentially involved in globe artichoke (C. cardunculus var. scolymus L.) tissue browning.Scientific reports · 2023Article
- Analyses of a chromosome-scale genome assembly reveal the origin and evolution of cultivated chrysanthemum.Nature communications · 2023Article
- Discovering the Repeatome of Five Species Belonging to the Asteraceae Family: A Computational Study.Plants (Basel, Switzerland) · 2023Article
- Genetic analysis reveals the inconsistency of amorpha-4,11-diene synthase, a key enzyme in the artemisinin synthesis pathway, in asteraceae.Chinese medicine · 2023Article
- Identification of drought-responsive phenolic compounds and their biosynthetic regulation under drought stress inFrontiers in plant science · 2023Article
- Genome sequencing reveals chromosome fusion and extensive expansion of genes related to secondary metabolism in Artemisia argyi.Plant biotechnology journal · 2022Article
- Development of Microsatellite Markers forPlants (Basel, Switzerland) · 2022Article
- Genome-Wide Survey and Development of the First Microsatellite Markers Database (International journal of molecular sciences · 2022Article
- Extensive sequence divergence between the reference genomes of Taraxacum kok-saghyz and Taraxacum mongolicum.Science China. Life sciences · 2022Article
2 more citing papers are in PubMed but not listed here.
Corrections and comments
- Erratum issued
Authors and funding
15 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Globe artichoke (Cynara cardunculus var. scolymus) is an out-crossing, perennial, multi-use crop species that is grown worldwide and belongs to the Compositae, one of the most successful Angiosperm families. We describe the first genome sequence of globe artichoke. The assembly, comprising of 13,588 scaffolds covering 725 of the 1,084 Mb genome, was generated using ~133-fold Illumina sequencing data and encodes 26,889 predicted genes. Re-sequencing (30×) of globe artichoke and cultivated cardoon (C. cardunculus var. altilis) parental genotypes and low-coverage (0.5 to 1×) genotyping-by-sequencing of 163 F1 individuals resulted in 73% of the assembled genome being anchored in 2,178 genetic bins ordered along 17 chromosomal pseudomolecules. This was achieved using a novel pipeline, SOILoCo (Scaffold Ordering by Imputation with Low Coverage), to detect heterozygous regions and assign parental haplotypes with low sequencing read depth and of unknown phase. SOILoCo provides a powerful tool for de novo genome analysis of outcrossing species. Our data will enable genome-scale analyses of evolutionary processes among crops, weeds, and wild species within and beyond the Compositae, and will facilitate the identification of economically important genes from related species.
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