Evidence map›Paper›PMID 26786024›Full record

ArticleScientific reports2016

Identification of novel noncoding transcripts in telomerase-negative yeast using RNA-seq.

Rachel O Niederer, Nickolas Papadopoulos, David C Zappulla

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Global Gene Expression of Post-Senescent Telomerase-NegativeJournal of fungi (Basel, Switzerland) · 2023
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Role of lncRNAs in Cellular Aging.Frontiers in endocrinology · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Rachel O NiedererDepartment of Biology, Johns Hopkins University, Baltimore, MD, 21218 USA.
Nickolas PapadopoulosLudwig Center for Cancer Genetics and Therapeutics, The Johns Hopkins Sidney Kimmel Comprehensive Cancer Center, Baltimore, MD 21231 USA.
David C ZappullaDepartment of Biology, Johns Hopkins University, Baltimore, MD, 21218 USA.
Johns Hopkins University · USSidney Kimmel Comprehensive Cancer Center · US

Funding

CELLULAR AND MOLECULAR BIOLOGYT32GM007231 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI VAN DOREN, MARK B · 1985 to 2020
$18.4M
Investigating Telomerase Mechanism by Exploring the RNAR00GM080400 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI ZAPPULLA, DAVID CLIFFORD · 2008 to 2010
$745k
NIGMS NIH HHS 2T32GM00723NIGMS NIH HHS R00 GM080400NIGMS NIH HHS R00 GM80400NIGMS NIH HHS T32 GM007231
6 · The paper itself

Abstract

Telomerase is a ribonucleoprotein that maintains the ends of linear chromosomes in most eukaryotes. Loss of telomerase activity results in shortening of telomeric DNA and eventually a specific G2/M cell-cycle arrest known as senescence. In humans, telomere shortening occurs during aging, while inappropriate activation of telomerase is associated with approximately 90% of cancers. Previous studies have identified several classes of noncoding RNAs (ncRNA) also associated with aging-related senescence and cancer, but whether ncRNAs are also involved in short-telomere-induced senescence in yeast is unknown. Here, we report 112 putative novel lncRNAs in the yeast Saccharomyces cerevisiae, 41 of which are only expressed in telomerase-negative yeast. Expression of approximately half of the lncRNAs is strongly correlated with that of adjacent genes, suggesting this subset may influence transcription of neighboring genes. Our results reveal a new potential mechanism governing adaptive changes in senescing and post-senescent survivor yeast cells.

Indexed as

RNA, UntranslatedTranscription, GeneticCellular SenescenceCluster AnalysisEpistasis, GeneticGene Expression ProfilingGene Expression Regulation, FungalMutationRNA, Long NoncodingSequence Analysis, RNATelomeraseYeastsRNA, Long NoncodingRNA, UntranslatedTelomerase

Identifiers

PMID26786024
PMCPMC4726298
OpenAlexW2268547249

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.