Evidence map›Paper›PMID 26784970›Full record

ArticleTranslational psychiatry2016

Epigenomic profiling of preterm infants reveals DNA methylation differences at sites associated with neural function.

S Sparrow, J R Manning, J Cartier, D Anblagan, M E Bastin, C Piyasena, R Pataky, E J Moore, S I Semple, A G Wilkinson and 3 more

Open access · goldAbstract read
In one paragraph

Article in Translational psychiatry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed, 5 pooled it
20.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 5 syntheses or guidelines pooled it, 93 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

S SparrowMRC Centre for Reproductive Health, University of Edinburgh, Queen's Medical Research Institute, Edinburgh, UK.
J R ManningMRC Centre for Regenerative Medicine, University of Edinburgh, Edinburgh, UK.
J CartierUniversity/BHF Centre for Cardiovascular Science, University of Edinburgh, Edinburgh, UK.
D AnblaganCentre for Clinical Brain Sciences, University of Edinburgh, Edinburgh, UK.
M E BastinCentre for Clinical Brain Sciences, University of Edinburgh, Edinburgh, UK.
C PiyasenaUniversity/BHF Centre for Cardiovascular Science, University of Edinburgh, Edinburgh, UK.
R PatakyMRC Centre for Reproductive Health, University of Edinburgh, Queen's Medical Research Institute, Edinburgh, UK.
E J MooreMRC Centre for Reproductive Health, University of Edinburgh, Queen's Medical Research Institute, Edinburgh, UK.
S I SempleClinical Research Imaging Centre, University of Edinburgh, Edinburgh, UK.
A G WilkinsonDepartment of Radiology, NHS Lothian, Edinburgh, UK.
M EvansDepartment of Pathology, NHS Lothian, Edinburgh, UK.
A J DrakeUniversity/BHF Centre for Cardiovascular Science, University of Edinburgh, Edinburgh, UK.
J P BoardmanMRC Centre for Reproductive Health, University of Edinburgh, Queen's Medical Research Institute, Edinburgh, UK.
University of Edinburgh · GBNHS Lothian · GBMRC Centre for Reproductive Health · GBQueen's Medical Centre · GB

Funding

Chief Scientist Office SCD/09Medical Research Council G1002033Medical Research Council MR/K026992/1Medical Research Council MR/N022556/1
6 · The paper itself

Abstract

DNA methylation (DNAm) plays a determining role in neural cell fate and provides a molecular link between early-life stress and neuropsychiatric disease. Preterm birth is a profound environmental stressor that is closely associated with alterations in connectivity of neural systems and long-term neuropsychiatric impairment. The aims of this study were to examine the relationship between preterm birth and DNAm, and to investigate factors that contribute to variance in DNAm. DNA was collected from preterm infants (birth<33 weeks gestation) and healthy controls (birth>37 weeks), and a genome-wide analysis of DNAm was performed; diffusion magnetic resonance imaging (dMRI) data were acquired from the preterm group. The major fasciculi were segmented, and fractional anisotropy, mean diffusivity and tract shape were calculated. Principal components (PC) analysis was used to investigate the contribution of MRI features and clinical variables to variance in DNAm. Differential methylation was found within 25 gene bodies and 58 promoters of protein-coding genes in preterm infants compared with controls; 10 of these have neural functions. Differences detected in the array were validated with pyrosequencing. Ninety-five percent of the variance in DNAm in preterm infants was explained by 23 PCs; corticospinal tract shape associated with 6th PC, and gender and early nutritional exposure associated with the 7th PC. Preterm birth is associated with alterations in the methylome at sites that influence neural development and function. Differential methylation analysis has identified several promising candidate genes for understanding the genetic/epigenetic basis of preterm brain injury.

Indexed as

Diffusion Magnetic Resonance ImagingBrainDNA MethylationEpigenomicsFemaleHumansInfant, NewbornInfant, PrematureMalePrincipal Component Analysis

Identifiers

PMID26784970
PMCPMC5068883
OpenAlexW2264451972

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.