Evidence map›Paper›PMID 26784191›Full record

ArticleInternational journal of molecular sciences2016

Alternative Splicing in Adhesion- and Motility-Related Genes in Breast Cancer.

Rosanna Aversa, Anna Sorrentino, Roberta Esposito, Maria Rosaria Ambrosio, Angela Amato, Alberto Zambelli, Alfredo Ciccodicola, Luciana D'Apice, Valerio Costa

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Review
  6. Frontiers in genetics · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. The determinants of alternative RNA splicing in human cells.Molecular genetics and genomics : MGG · 2017
    Review
  11. Transcriptome Profiling in Human Diseases: New Advances and Perspectives.International journal of molecular sciences · 2017
    Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Rosanna AversaInstitute of Genetics and Biophysics "Adriano Buzzati-Traverso", Consiglio Nazionale delle Ricerche, Via P. Castellino 111, 80131 Naples, Italy. rosanna.aversa@gmail.com.
Anna SorrentinoInstitute of Genetics and Biophysics "Adriano Buzzati-Traverso", Consiglio Nazionale delle Ricerche, Via P. Castellino 111, 80131 Naples, Italy. anna.sorrentino@igb.cnr.it.
Roberta EspositoInstitute of Genetics and Biophysics "Adriano Buzzati-Traverso", Consiglio Nazionale delle Ricerche, Via P. Castellino 111, 80131 Naples, Italy. roberta.esposito@igb.cnr.it.
Maria Rosaria AmbrosioInstitute of Genetics and Biophysics "Adriano Buzzati-Traverso", Consiglio Nazionale delle Ricerche, Via P. Castellino 111, 80131 Naples, Italy. mariarosaria.ambrosio@gmail.com.
Angela AmatoLab of Experimental Oncology and Pharmacogenomics, Istituto di Ricovero e Cura a Carattere Scientifico Fondazione "Salvatore Maugeri", 27100 Pavia, Italy. angela.amato@fsm.it.
Alberto ZambelliMedical Oncology Unit, Azienda Ospedaliera Papa Giovanni XXIII, 24127 Bergamo, Italy. alberto.zambelli@fsm.it.
Alfredo CiccodicolaInstitute of Genetics and Biophysics "Adriano Buzzati-Traverso", Consiglio Nazionale delle Ricerche, Via P. Castellino 111, 80131 Naples, Italy. alfredo.ciccodicola@igb.cnr.it.
Luciana D'ApiceInstitute of Protein Biochemistry, Consiglio Nazionale delle Ricerche, Via P. Castellino 111, 80131 Naples, Italy. l.dapice@ibp.cnr.it.
Valerio CostaInstitute of Genetics and Biophysics "Adriano Buzzati-Traverso", Consiglio Nazionale delle Ricerche, Via P. Castellino 111, 80131 Naples, Italy. valerio.costa@igb.cnr.it.
Institute of Genetics and Biophysics · ITFondazione Salvatore Maugeri · ITInstitute of Protein Biochemistry · ITOspedale Papa Giovanni XXIII · ITParthenope University of Naples · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Breast cancer is the most common tumor and the second leading cause of cancer death among woman, mainly caused by the metastatic spread. Tumor invasiveness is due to an altered expression of adhesion molecules. Among them, semaphorins are of peculiar interest. Cancer cells can manipulate alternative splicing patterns to modulate the expression of adhesion- and motility-related molecules, also at the isoform level. In this study, combining RNA-Sequencing on MCF-7 to targeted experimental validations-in human breast cell lines and breast tumor biopsies-we identified 12 new alternative splicing transcripts in genes encoding adhesion- and motility-related molecules, including semaphorins, their receptors and co-receptors. Among them, a new SEMA3F transcript is expressed in all breast cell lines and breast cancer biopsies, and is translated into a new semaphorin 3F isoform. In silico analysis predicted that most of the new putative proteins lack functional domains, potentially missing some functions and acquiring new ones. Our findings better describe the extent of alternative splicing in breast cancer and highlight the need to further investigate adhesion- and motility-related molecules to gain insights into breast cancer progression.

Indexed as

Alternative SplicingGene Expression Regulation, NeoplasticBase SequenceBreast NeoplasmsCell AdhesionCell MovementExonsFemaleHumansIntronsMCF-7 CellsMembrane ProteinsMolecular Sequence DataNeoplasm ProteinsNerve Tissue ProteinsProtein IsoformsMembrane ProteinsNeoplasm ProteinsNerve Tissue ProteinsPLXNB1 protein, humanProtein IsoformsReceptors, Cell SurfaceRNA, MessengerSEMA3F protein, humanalternative splicingbreast cancercell adhesion and motilityRNA-Sequencing

Identifiers

PMID26784191
PMCPMC4730362
OpenAlexW2279137524

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.