Evidence map›Paper›PMID 26783962›Full record

ArticleOncotarget2016

ROS1 copy number alterations are frequent in non-small cell lung cancer.

Sergi Clavé, Javier Gimeno, Ana M Muñoz-Mármol, Joana Vidal, Noemí Reguart, Enric Carcereny, Lara Pijuan, Sílvia Menéndez, Álvaro Taus, José Luís Mate and 5 more

Abstract read
In one paragraph

Article in Oncotarget, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
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  4. Routine Clinically Detected IncreasedJTO clinical and research reports · 2023
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  8. Observational
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  11. Clinical characteristics of patients withTranslational cancer research · 2020
    Article
  12. Article
  13. Oncotarget · 2019
    Article
  14. Article
  15. A consensus statement on the gender perspective in lung cancer.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2017
    Review
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Sergi ClavéLaboratori de Citogenètica Molecular, Servei de Patologia, Hospital del Mar, Barcelona, Spain.
Javier GimenoServei de Patologia, Hospital del Mar, Barcelona, Spain.
Ana M Muñoz-MármolServei de Anatomia Patològica, Hospital Universitari Germans Trias i Pujol, Badalona, Spain.
Joana VidalServei de Oncologia Mèdica, Hospital del Mar, Barcelona, Spain.
Noemí ReguartServei de Oncologia Mèdica, ICMHO, Hospital Clinic Barcelona, Barcelona, Spain.
Enric CarcerenyDepartament de Oncologia Mèdica, Institut Català de Oncologia (ICO), Hospital Universitari Germans Trias i Pujol, Badalona, Spain.
Lara PijuanServei de Patologia, Hospital del Mar, Barcelona, Spain.
Sílvia MenéndezPrograma de Recerca en Càncer, IMIM (Institut Hospital del Mar de Investigacions Mèdiques), Barcelona, Spain.
Álvaro TausServei de Oncologia Mèdica, Hospital del Mar, Barcelona, Spain.
José Luís MateServei de Anatomia Patològica, Hospital Universitari Germans Trias i Pujol, Badalona, Spain.
Sergio SerranoServei de Patologia, Hospital del Mar, Barcelona, Spain.
Joan AlbanellPrograma de Recerca en Càncer, IMIM (Institut Hospital del Mar de Investigacions Mèdiques), Barcelona, Spain.
Blanca EspinetLaboratori de Citogenètica Molecular, Servei de Patologia, Hospital del Mar, Barcelona, Spain.
Edurne ArriolaPrograma de Recerca en Càncer, IMIM (Institut Hospital del Mar de Investigacions Mèdiques), Barcelona, Spain.
Marta SalidoLaboratori de Citogenètica Molecular, Servei de Patologia, Hospital del Mar, Barcelona, Spain.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesWe aimed to determine the prevalence and partners of ROS1 rearrangements, to explore the correlation between FISH and IHC assays, and to investigate clinical implications of ROS1 copy number alterations (CNAs).

methodsA total of 314 NSCLC patients were screened using ROS1 FISH break-apart probes. Of these, 47 surgical tumors were included in TMAs to analyze ROS1 heterogeneity assessed either by FISH and IHC, and chromosome 6 aneusomy. To characterize ROS1 partners, probes for CD74, EZR, SLC34A2 and SDC3 genes were developed. ROS1 positive FISH cases were screened also by IHC.

resultsFive patients were ROS1 positive (1.8%). We identified two known fusion partners in three patients: CD74 and SLC34A2. Four out of five ROS1 rearranged patients were female, never smokers and with adenocarcinoma histology. Rearranged cases were also positive by IHC as well. According to ROS1 CNAs, we found a prevalence of 37.8% gains/amplifications and 25.1% deletions.

conclusionsThis study point out the high prevalence of ROS1 CNAs in a large series of NSCLC. ROS1 gains, amplifications and deletions, most of them due to chromosome 6 polysomy or monosomy, were heterogeneous within a tumor and had no impact on overall survival.

Indexed as

Gene RearrangementAdenocarcinomaAdultAgedAged, 80 and overBiomarkers, TumorCarcinoma, Large CellCarcinoma, Non-Small-Cell LungCarcinoma, Squamous CellDNA Copy Number VariationsFemaleFollow-Up StudiesHumansImmunoenzyme TechniquesIn Situ Hybridization, FluorescenceLung NeoplasmsBiomarkers, TumorProtein-Tyrosine KinasesProto-Oncogene ProteinsROS1 protein, humancopy number alterationsFISHheterogeneityIHCROS1

Identifiers

PMID26783962
PMCPMC4884972

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.