Evidence map›Paper›PMID 26783323›Full record

ArticleThe Journal of experimental medicine2016

A novel human autoimmune syndrome caused by combined hypomorphic and activating mutations in ZAP-70.

Alice Y Chan, Divya Punwani, Theresa A Kadlecek, Morton J Cowan, Jean L Olson, Erin F Mathes, Uma Sunderam, Shu Man Fu, Rajgopal Srinivasan, John Kuriyan and 3 more

Open access · bronzeAbstract readCase Reports
In one paragraph

Article in The Journal of experimental medicine, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed, 2 pooled it
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 2 syntheses or guidelines pooled it, 98 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Association ofFrontiers in bioinformatics · 2026
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  17. Novel PGM3 mutation in two siblings with combined immunodeficiency and childhood bullous pemphigoid: a case report and review of the literature.Allergy, asthma, and clinical immunology : official journal of the Canadian Society of Allergy and Clinical Immunology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 2 countries.

Alice Y ChanDepartment of Pediatrics, University of California San Francisco School of Medicine, San Francisco, CA 94143.
Divya PunwaniDepartment of Pediatrics, University of California San Francisco School of Medicine, San Francisco, CA 94143.
Theresa A KadlecekDepartment of Medicine, Rosalind Russell and Ephraim Engleman Rheumatology Research Center and Howard Hughes Medical Institute, University of California San Francisco School of Medicine, San Francisco, CA 94143.
Morton J CowanDepartment of Pediatrics, University of California San Francisco School of Medicine, San Francisco, CA 94143.
Jean L OlsonDepartment of Pathology, University of California San Francisco School of Medicine, San Francisco, CA 94143.
Erin F MathesDepartment of Pediatrics, University of California San Francisco School of Medicine, San Francisco, CA 94143 Department of Dermatology, University of California San Francisco School of Medicine, San Francisco, CA 94143.
Uma SunderamInnovation Labs, Tata Consulting Services, Hyderabad 50019, Telangana, India.
Shu Man FuDepartment of Medicine, University of Virginia School of Medicine, Charlottesville, VA 22908.
Rajgopal SrinivasanInnovation Labs, Tata Consulting Services, Hyderabad 50019, Telangana, India.
John KuriyanDepartment of Molecular and Cell Biology and Department of Chemistry, California Institute of Quantitative Biosciences and Howard Hughes Medical Institute and Physical Biosciences Division, Lawrence Berkeley National Laboratory, University of California, Berkeley, Berkeley, CA 94720.
Steven E BrennerDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720.
Arthur WeissDepartment of Medicine, Rosalind Russell and Ephraim Engleman Rheumatology Research Center and Howard Hughes Medical Institute, University of California San Francisco School of Medicine, San Francisco, CA 94143.
Jennifer M PuckDepartment of Pediatrics, University of California San Francisco School of Medicine, San Francisco, CA 94143 jennifer.puck@ucsf.edu.
University of California, San Francisco · USHoward Hughes Medical Institute · USTata Consultancy Services (India) · INQB3 · USUniversity of California, Berkeley · USUniversity of Virginia · US

Funding

Understand the metabolic fitness of naïve T cellsP01AI091580 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ARTHUR WEISS · 2011 to 2026
$31.1M
Training of Clinical Investigators in Primary Immune DeficienciesU54AI082973 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DVORAK, CHRISTOPHER CRAIG, HADDAD, ELIE · 2009 to 2023
$23.3M
Research BaseP30DK063720 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KRUMMEL, MATTHEW F · 2003 to 2019
$21.8M
Newborn Screening for T-Cell Disorders: Spectrum and OutcomesR01AI105776 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BRENNER, STEVEN E, CHURCH, JOSEPH · 2013 to 2016
$2.4M
Inherited Disorders of Lymphocyte DevelopmentR01AI078248 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI PUCK, JENNIFER M. · 2010 to 2014
$1.9M
Clinical and Transtional Science InstituteTL1TR000144 · NCATS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GRANDIS, JENNIFER RUBIN · 2012 to 2015
$643k
NCATS NIH HHS TL1 TR000144NCATS NIH HHS TL1TR000144NIAID NIH HHS AI078248NIAID NIH HHS AI105776NIAID NIH HHS P01 AI091580NIAID NIH HHS R01 AI078248NIAID NIH HHS R01 AI105776NIAID NIH HHS U54 AI082973NIDDK NIH HHS P30 DK063720
6 · The paper itself

Abstract

A brother and sister developed a previously undescribed constellation of autoimmune manifestations within their first year of life, with uncontrollable bullous pemphigoid, colitis, and proteinuria. The boy had hemophilia due to a factor VIII autoantibody and nephrotic syndrome. Both children required allogeneic hematopoietic cell transplantation (HCT), which resolved their autoimmunity. The early onset, severity, and distinctive findings suggested a single gene disorder underlying the phenotype. Whole-exome sequencing performed on five family members revealed the affected siblings to be compound heterozygous for two unique missense mutations in the 70-kD T cell receptor ζ-chain associated protein (ZAP-70). Healthy relatives were heterozygous mutation carriers. Although pre-HCT patient T cells were not available, mutation effects were determined using transfected cell lines and peripheral blood from carriers and controls. Mutation R192W in the C-SH2 domain exhibited reduced binding to phosphorylated ζ-chain, whereas mutation R360P in the N lobe of the catalytic domain disrupted an autoinhibitory mechanism, producing a weakly hyperactive ZAP-70 protein. Although human ZAP-70 deficiency can have dysregulated T cells, and autoreactive mouse thymocytes with weak Zap-70 signaling can escape tolerance, our patients' combination of hypomorphic and activating mutations suggested a new disease mechanism and produced previously undescribed human ZAP-70-associated autoimmune disease.

Indexed as

Mutation, MissenseAmino Acid SequenceAnimalsAutoimmune DiseasesBase SequenceCell LineChild, PreschoolFemaleHematopoietic Stem Cell TransplantationHemophilia AHeterozygoteHumansInfantMaleMiceModels, Molecularantigen T cell receptor, zeta chainMutant ProteinsReceptors, Antigen, T-CellZAP70 protein, humanZAP-70 Protein-Tyrosine Kinase

Identifiers

PMID26783323
PMCPMC4749924
OpenAlexW2257862647

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.