Evidence map›Paper›PMID 26782997›Full record

ArticleMolecular biology and evolution2016

Divergent MLS1 Promoters Lie on a Fitness Plateau for Gene Expression.

Andrew C Bergen, Gerilyn M Olsen, Justin C Fay

Open access · hybridAbstract read
In one paragraph

Article in Molecular biology and evolution, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Mutational scans reveal differential evolvability ofPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2023
    Article
  3. Mechanisms of regulatory evolution in yeast.Current opinion in genetics & development · 2022
    Review
  4. Article
  5. eLife · 2021
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Andrew C BergenMolecular Genetics and Genomics Program, Washington University, St. Louis.
Gerilyn M OlsenWashington University, St. Louis.
Justin C FayDepartment of Genetics, Washington University, St. Louis Center for Genome Sciences and Systems Biology, Washington University, St. Louis jfay@genetics.wustl.edu.
Washington University in St. Louis · US

Funding

TRAINING PROGRAM IN CELLULAR AND MOLECULAR BIOLOGYT32GM007067 · NIGMS · WASHINGTON UNIVERSITY · PI TRUE-KROB, HEATHER L · 1985 to 2020
$20.4M
Genetic basis and evolution of thermotolerance in the Saccharomyces yeast speciesR01GM080669 · NIGMS · WASHINGTON UNIVERSITY · PI FAY, JUSTIN C · 2007 to 2025
$5.3M
NIGMS NIH HHS R01 GM080669NIGMS NIH HHS T32 GM007067
6 · The paper itself

Abstract

Qualitative patterns of gene activation and repression are often conserved despite an abundance of quantitative variation in expression levels within and between species. A major challenge to interpreting patterns of expression divergence is knowing which changes in gene expression affect fitness. To characterize the fitness effects of gene expression divergence, we placed orthologous promoters from eight yeast species upstream of malate synthase (MLS1) in Saccharomyces cerevisiae As expected, we found these promoters varied in their expression level under activated and repressed conditions as well as in their dynamic response following loss of glucose repression. Despite these differences, only a single promoter driving near basal levels of expression caused a detectable loss of fitness. We conclude that the MLS1 promoter lies on a fitness plateau whereby even large changes in gene expression can be tolerated without a substantial loss of fitness.

Indexed as

Gene Expression Regulation, FungalGenetic FitnessDNA, FungalEvolution, MolecularGenes, FungalMalate SynthasePromoter Regions, GeneticSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscriptional ActivationTranscription FactorsDNA, FungalMalate SynthaseSaccharomyces cerevisiae ProteinsTranscription Factorsbinding sites.evolutionexpressionMLS1yeast

Identifiers

PMID26782997
PMCPMC4839218
OpenAlexW2288858900

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.