Evidence map›Paper›PMID 26781725›Full record

ArticleScientific reports2016

Evolved hexose transporter enhances xylose uptake and glucose/xylose co-utilization in Saccharomyces cerevisiae.

Amanda Reider Apel, Mario Ouellet, Heather Szmidt-Middleton, Jay D Keasling, Aindrila Mukhopadhyay

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
12.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 160 citations in OpenAlex.

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  13. FromJournal of fungi (Basel, Switzerland) · 2023
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  14. Engineering ofEngineering microbiology · 2023
    Review
  15. Article
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  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Amanda Reider ApelJoint BioEnergy Institute, 5885 Hollis St, Emeryville, CA 94608, USA.
Mario OuelletJoint BioEnergy Institute, 5885 Hollis St, Emeryville, CA 94608, USA.
Heather Szmidt-MiddletonJoint BioEnergy Institute, 5885 Hollis St, Emeryville, CA 94608, USA.
Jay D KeaslingJoint BioEnergy Institute, 5885 Hollis St, Emeryville, CA 94608, USA.
Aindrila MukhopadhyayJoint BioEnergy Institute, 5885 Hollis St, Emeryville, CA 94608, USA.
Joint BioEnergy Institute · USLawrence Berkeley National Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Enhancing xylose utilization has been a major focus in Saccharomyces cerevisiae strain-engineering efforts. The incentive for these studies arises from the need to use all sugars in the typical carbon mixtures that comprise standard renewable plant-biomass-based carbon sources. While major advances have been made in developing utilization pathways, the efficient import of five carbon sugars into the cell remains an important bottleneck in this endeavor. Here we use an engineered S. cerevisiae BY4742 strain, containing an established heterologous xylose utilization pathway, and imposed a laboratory evolution regime with xylose as the sole carbon source. We obtained several evolved strains with improved growth phenotypes and evaluated the best candidate using genome resequencing. We observed remarkably few single nucleotide polymorphisms in the evolved strain, among which we confirmed a single amino acid change in the hexose transporter HXT7 coding sequence to be responsible for the evolved phenotype. The mutant HXT7(F79S) shows improved xylose uptake rates (Vmax = 186.4 ± 20.1 nmol•min(-1)•mg(-1)) that allows the S. cerevisiae strain to show significant growth with xylose as the sole carbon source, as well as partial co-utilization of glucose and xylose in a mixed sugar cultivation.

Indexed as

BiomassCarbonGlucoseMonosaccharide Transport ProteinsPolymorphism, Single NucleotideSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSignal TransductionXyloseCarbonGlucoseMonosaccharide Transport ProteinsSaccharomyces cerevisiae ProteinsXylose

Identifiers

PMID26781725
PMCPMC4726032
OpenAlexW2397674976

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.