Evidence map›Paper›PMID 26779303›Full record

ArticleStandards in genomic sciences2016

Permanent draft genome sequence of the probiotic strain Propionibacterium freudenreichii CIRM-BIA 129 (ITG P20).

Hélène Falentin, Stéphanie-Marie Deutsch, Valentin Loux, Amal Hammani, Julien Buratti, Sandrine Parayre, Victoria Chuat, Valérie Barbe, Jean-Marc Aury, Gwenaël Jan and 1 more

Open access · goldAbstract read
In one paragraph

Article in Standards in genomic sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.0field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
  2. Deciphering the metabolism ofApplied and environmental microbiology · 2024
    Article
  3. Article
  4. Differential Adaptation ofFrontiers in microbiology · 2020
    Article
  5. One complete and three draft genome sequences of fourStandards in genomic sciences · 2018
    Article
  6. Article
  7. Review
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Hélène FalentinINRA, UMR 1253, Science et Technologie du Lait et de l'Oeuf, 35000 Rennes, France ; AGROCAMPUS OUEST, UMR1253, UMR Science et Technologie du Lait et de l'Oeuf, 35000 Rennes, France.
Stéphanie-Marie DeutschINRA, UMR 1253, Science et Technologie du Lait et de l'Oeuf, 35000 Rennes, France ; AGROCAMPUS OUEST, UMR1253, UMR Science et Technologie du Lait et de l'Oeuf, 35000 Rennes, France.
Valentin LouxINRA, UR1077 Unité Mathématique Informatique et Génome, Jouy-en-Josas, France.
Amal HammaniINRA, UR1077 Unité Mathématique Informatique et Génome, Jouy-en-Josas, France.
Julien BurattiINRA, UR1077 Unité Mathématique Informatique et Génome, Jouy-en-Josas, France.
Sandrine ParayreINRA, UMR 1253, Science et Technologie du Lait et de l'Oeuf, 35000 Rennes, France ; AGROCAMPUS OUEST, UMR1253, UMR Science et Technologie du Lait et de l'Oeuf, 35000 Rennes, France.
Victoria ChuatINRA, UMR 1253, Science et Technologie du Lait et de l'Oeuf, 35000 Rennes, France ; AGROCAMPUS OUEST, UMR1253, UMR Science et Technologie du Lait et de l'Oeuf, 35000 Rennes, France.
Valérie BarbeCEA Genoscope CNRS and université d'Evry, 91 006 Evry, France.
Jean-Marc AuryCEA Genoscope CNRS and université d'Evry, 91 006 Evry, France.
Gwenaël JanINRA, UMR 1253, Science et Technologie du Lait et de l'Oeuf, 35000 Rennes, France ; AGROCAMPUS OUEST, UMR1253, UMR Science et Technologie du Lait et de l'Oeuf, 35000 Rennes, France.
Yves Le LoirINRA, UMR 1253, Science et Technologie du Lait et de l'Oeuf, 35000 Rennes, France ; AGROCAMPUS OUEST, UMR1253, UMR Science et Technologie du Lait et de l'Oeuf, 35000 Rennes, France.
Laboratoire Science & technologie du Lait & de l'œuf · FRGenoscope · FRMathématiques et Informatique Appliquées du Génome à l'Environnement · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Propionibacterium freudenreichii belongs to the class Actinobacteria (Gram positive with a high GC content). This "Generally Recognized As Safe" (GRAS) species is traditionally used as (i) a starter for Swiss-type cheeses where it is responsible for holes and aroma production, (ii) a vitamin B12 and propionic acid producer in white biotechnologies, and (iii) a probiotic for use in humans and animals because of its bifidogenic and anti-inflammatory properties. Until now, only strain CIRM-BIA1T had been sequenced, annotated and become publicly available. Strain CIRM-BIA129 (commercially available as ITG P20) has considerable anti-inflammatory potential. Its gene content was compared to that of CIRM-BIA1 T. This strain contains 2384 genes including 1 ribosomal operon, 45 tRNA and 30 pseudogenes.

Indexed as

anti-inflammatoryGRASimmunomodulationprobioticQPSsurface proteins

Identifiers

PMID26779303
PMCPMC4714504
OpenAlexW2273241946

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.