Evidence map›Paper›PMID 26779221›Full record

ArticleFrontiers in plant science2015

Developmental Nuclear Localization and Quantification of GFP-Tagged EB1c in Arabidopsis Root Using Light-Sheet Microscopy.

Dominik Novák, Anna Kuchařová, Miroslav Ovečka, George Komis, Jozef Šamaj

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
10.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Dominik NovákDepartment of Cell Biology, Centre of the Region Haná for Biotechnological and Agricultural Research, Palacký University Olomouc Olomouc, Czech Republic.
Anna KuchařováDepartment of Cell Biology, Centre of the Region Haná for Biotechnological and Agricultural Research, Palacký University Olomouc Olomouc, Czech Republic.
Miroslav OvečkaDepartment of Cell Biology, Centre of the Region Haná for Biotechnological and Agricultural Research, Palacký University Olomouc Olomouc, Czech Republic.
George KomisDepartment of Cell Biology, Centre of the Region Haná for Biotechnological and Agricultural Research, Palacký University Olomouc Olomouc, Czech Republic.
Jozef ŠamajDepartment of Cell Biology, Centre of the Region Haná for Biotechnological and Agricultural Research, Palacký University Olomouc Olomouc, Czech Republic.
Palacký University Olomouc · CZCzech Academy of Sciences, Biology Centre · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The development of the root apex is determined by progress of cells from the meristematic region to the successive post-mitotic developmental zones for transition, cell elongation and final cell differentiation. We addressed root development, tissue architecture and root developmental zonation by means of light-sheet microscopic imaging of Arabidopsis thaliana seedlings expressing END BINDING protein 1c (EB1c) fused to green fluorescent protein (GFP) under control of native EB1c promoter. Unlike the other two members of the EB1 family, plant-specific EB1c shows prominent nuclear localization in non-dividing cells in all developmental zones of the root apex. The nuclear localization of EB1c was previously mentioned solely in meristematic cells, but not further addressed. With the help of advanced light-sheet microscopy, we report quantitative evaluations of developmentally-regulated nuclear levels of the EB1c protein tagged with GFP relatively to the nuclear size in diverse root tissues (epidermis, cortex, and endodermis) and root developmental zones (meristem, transition, and elongation zones). Our results demonstrate a high potential of light-sheet microscopy for 4D live imaging of fluorescently-labeled nuclei in complex samples such as developing roots, showing capacity to quantify parameters at deeper cell layers (e.g., endodermis) with minimal aberrations. The data presented herein further signify the unique role of developmental cell reprogramming in the transition from cell proliferation to cell differentiation in developing root apex.

Indexed as

developmentend-binding 1c (EB1c)light-sheet microscopynucleusroot apextransition zone

Identifiers

PMID26779221
PMCPMC4700127
OpenAlexW2270803229

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.