Evidence map›Paper›PMID 26779207›Full record

ArticleFrontiers in plant science2015

Short-Term Molecular Acclimation Processes of Legume Nodules to Increased External Oxygen Concentration.

Ulrike Avenhaus, Ricardo A Cabeza, Rebecca Liese, Annika Lingner, Klaus Dittert, Gabriela Salinas-Riester, Claudia Pommerenke, Joachim Schulze

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
15.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 36 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Ulrike AvenhausDepartment of Crop Science, Section for Plant Nutrition and Crop Physiology, Faculty of Agriculture, University of Goettingen Goettingen, Germany.
Ricardo A CabezaDepartment of Crop Science, Section for Plant Nutrition and Crop Physiology, Faculty of Agriculture, University of GoettingenGoettingen, Germany; Departamento de Ingeniería y Suelos, Facultad de Ciencias Agronómicas, Universidad de ChileLa Pintana, Chile.
Rebecca LieseDepartment of Crop Science, Section for Plant Nutrition and Crop Physiology, Faculty of Agriculture, University of Goettingen Goettingen, Germany.
Annika LingnerDepartment of Crop Science, Section for Plant Nutrition and Crop Physiology, Faculty of Agriculture, University of Goettingen Goettingen, Germany.
Klaus DittertDepartment of Crop Science, Section for Plant Nutrition and Crop Physiology, Faculty of Agriculture, University of Goettingen Goettingen, Germany.
Gabriela Salinas-RiesterDepartment of Developmental Biochemistry, DNA Microarray and Deep-Sequencing Facility, Faculty of Medicine, University of Goettingen Goettingen, Germany.
Claudia PommerenkeDepartment of Developmental Biochemistry, DNA Microarray and Deep-Sequencing Facility, Faculty of Medicine, University of Goettingen Goettingen, Germany.
Joachim SchulzeDepartment of Crop Science, Section for Plant Nutrition and Crop Physiology, Faculty of Agriculture, University of Goettingen Goettingen, Germany.
University of Göttingen · DEUniversity of Chile · CL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nitrogenase is an oxygen labile enzyme. Microaerobic conditions within the infected zone of nodules are maintained primarily by an oxygen diffusion barrier (ODB) located in the nodule cortex. Flexibility of the ODB is important for the acclimation processes of nodules in response to changes in external oxygen concentration. The hypothesis of the present study was that there are additional molecular mechanisms involved. Nodule activity of Medicago truncatula plants were continuously monitored during a change from 21 to 25 or 30% oxygen around root nodules by measuring nodule H2 evolution. Within about 2 min of the increase in oxygen concentration, a steep decline in nitrogenase activity occurred. A quick recovery commenced about 8 min later. A qPCR-based analysis of the expression of genes for nitrogenase components showed a tendency toward upregulation during the recovery. The recovery resulted in a new constant activity after about 30 min, corresponding to approximately 90% of the pre-treatment level. An RNAseq-based comparative transcriptome profiling of nodules at that point in time revealed that genes for nodule-specific cysteine-rich (NCR) peptides, defensins, leghaemoglobin and chalcone and stilbene synthase were significantly upregulated when considered as a gene family. A gene for a nicotianamine synthase-like protein (Medtr1g084050) showed a strong increase in count number. The gene appears to be of importance for nodule functioning, as evidenced by its consistently high expression in nodules and a strong reaction to various environmental cues that influence nodule activity. A Tnt1-mutant that carries an insert in the coding sequence (cds) of that gene showed reduced nitrogen fixation and less efficient acclimation to an increased external oxygen concentration. It was concluded that sudden increases in oxygen concentration around nodules destroy nitrogenase, which is quickly counteracted by an increased neoformation of the enzyme. This reaction might be induced by increased formation of NCR peptides and necessitates an efficient iron supply to the bacteroid, which is probably mediated by nicotianamine. The paper is dedicated to the 85th birthday of Prof. Dr. Günther Schilling, University of Halle/Wittenberg, Germany, https://de.wikipedia.org/wiki/Günther_Schilling.

Indexed as

H2 evolutionnicotianamine synthasenitrogenasenitrogen fixationnodulesoxygenRNAseqTnt1-mutant

Identifiers

PMID26779207
PMCPMC4702478
OpenAlexW2256326454

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.