Evidence map›Paper›PMID 26779199›Full record

ArticleFrontiers in plant science2015

Identification and Validation of Selected Universal Stress Protein Domain Containing Drought-Responsive Genes in Pigeonpea (Cajanus cajan L.).

Pallavi Sinha, Lekha T Pazhamala, Vikas K Singh, Rachit K Saxena, L Krishnamurthy, Sarwar Azam, Aamir W Khan, Rajeev K Varshney

Abstract read
In one paragraph

Article in Frontiers in plant science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
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  7. Review
  8. Genome-Wide Identification and Expression Profiling of Potato (International journal of molecular sciences · 2024
    Article
  9. Universal Stress Proteins: From Gene to Function.International journal of molecular sciences · 2023
    Review
  10. ComprehensiveFrontiers in plant science · 2021
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Pallavi SinhaCenter of Excellence in Genomics (CEG), International Crops Research Institute for the Semi-Arid Tropics (ICRISAT) Hyderabad, India.
Lekha T PazhamalaCenter of Excellence in Genomics (CEG), International Crops Research Institute for the Semi-Arid Tropics (ICRISAT) Hyderabad, India.
Vikas K SinghCenter of Excellence in Genomics (CEG), International Crops Research Institute for the Semi-Arid Tropics (ICRISAT) Hyderabad, India.
Rachit K SaxenaCenter of Excellence in Genomics (CEG), International Crops Research Institute for the Semi-Arid Tropics (ICRISAT) Hyderabad, India.
L KrishnamurthyCenter of Excellence in Genomics (CEG), International Crops Research Institute for the Semi-Arid Tropics (ICRISAT) Hyderabad, India.
Sarwar AzamCenter of Excellence in Genomics (CEG), International Crops Research Institute for the Semi-Arid Tropics (ICRISAT) Hyderabad, India.
Aamir W KhanCenter of Excellence in Genomics (CEG), International Crops Research Institute for the Semi-Arid Tropics (ICRISAT) Hyderabad, India.
Rajeev K VarshneyCenter of Excellence in Genomics (CEG), International Crops Research Institute for the Semi-Arid Tropics (ICRISAT)Hyderabad, India; School of Plant Biology and the Institute of Agriculture, The University of Western AustraliaPerth, WA, Australia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pigeonpea is a resilient crop, which is relatively more drought tolerant than many other legume crops. To understand the molecular mechanisms of this unique feature of pigeonpea, 51 genes were selected using the Hidden Markov Models (HMM) those codes for proteins having close similarity to universal stress protein domain. Validation of these genes was conducted on three pigeonpea genotypes (ICPL 151, ICPL 8755, and ICPL 227) having different levels of drought tolerance. Gene expression analysis using qRT-PCR revealed 6, 8, and 18 genes to be ≥2-fold differentially expressed in ICPL 151, ICPL 8755, and ICPL 227, respectively. A total of 10 differentially expressed genes showed ≥2-fold up-regulation in the more drought tolerant genotype, which encoded four different classes of proteins. These include plant U-box protein (four genes), universal stress protein A-like protein (four genes), cation/H(+) antiporter protein (one gene) and an uncharacterized protein (one gene). Genes C.cajan_29830 and C.cajan_33874 belonging to uspA, were found significantly expressed in all the three genotypes with ≥2-fold expression variations. Expression profiling of these two genes on the four other legume crops revealed their specific role in pigeonpea. Therefore, these genes seem to be promising candidates for conferring drought tolerance specifically to pigeonpea.

Indexed as

drought responsive genesexpression profilingin-silico analysislegumespigeonpea

Identifiers

PMID26779199
PMCPMC4701917

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