Evidence map›Paper›PMID 26779130›Full record

ArticleFrontiers in microbiology2015

Analysis of Two Complementary Single-Gene Deletion Mutant Libraries of Salmonella Typhimurium in Intraperitoneal Infection of BALB/c Mice.

Cecilia A Silva-Valenzuela, Roberto C Molina-Quiroz, Prerak Desai, Camila Valenzuela, Steffen Porwollik, Ming Zhao, Robert M Hoffman, Helene Andrews-Polymenis, Inés Contreras, Carlos A Santiviago and 1 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
4.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Cecilia A Silva-ValenzuelaDepartment of Microbiology and Molecular Genetics, University of California, IrvineIrvine, CA, USA; Departamento de Bioquímica y Biología Molecular, Facultad de Ciencias Químicas y Farmacéuticas, Universidad de ChileSantiago, Chile.
Roberto C Molina-QuirozDepartamento de Bioquímica y Biología Molecular, Facultad de Ciencias Químicas y Farmacéuticas, Universidad de ChileSantiago, Chile; Center for Adaptation Genetics and Drug Resistance, Tufts UniversityBoston, MA, USA.
Prerak DesaiDepartment of Microbiology and Molecular Genetics, University of California, Irvine Irvine, CA, USA.
Camila ValenzuelaDepartamento de Bioquímica y Biología Molecular, Facultad de Ciencias Químicas y Farmacéuticas, Universidad de Chile Santiago, Chile.
Steffen PorwollikDepartment of Microbiology and Molecular Genetics, University of California, Irvine Irvine, CA, USA.
Ming ZhaoAnticancer Inc. San Diego, CA, USA.
Robert M HoffmanAnticancer Inc.San Diego, CA, USA; Department of Surgery, UC San Diego School of Medicine, University of California, San DiegoSan Diego, CA, USA.
Helene Andrews-PolymenisDepartment of Microbial Pathogenesis and Immunology, Texas A&M University College Station, TX, USA.
Inés ContrerasDepartamento de Bioquímica y Biología Molecular, Facultad de Ciencias Químicas y Farmacéuticas, Universidad de Chile Santiago, Chile.
Carlos A SantiviagoDepartamento de Bioquímica y Biología Molecular, Facultad de Ciencias Químicas y Farmacéuticas, Universidad de Chile Santiago, Chile.
Michael McClellandDepartment of Microbiology and Molecular Genetics, University of California, Irvine Irvine, CA, USA.
University of California, Irvine · USUniversity of Chile · CLAntiCancer (United States) · USTexas A&M University · USTufts University · US

Funding

Univ.of Calif., Irvine Cancer Center Support GrantP30CA062203 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Christine Hui · 1994 to 2026
$57.9M
Identification of Salmonella Genes Important for Systemic ColonizationR01AI083646 · NIAID · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI ANDREWS-POLYMENIS, HELENE L · 2009 to 2012
$1.6M
NCI NIH HHS P30 CA062203NIAID NIH HHS R01 AI083646
6 · The paper itself

Abstract

Two pools of individual single gene deletion (SGD) mutants of S. Typhimurium 14028s encompassing deletions of 3,923 annotated non-essential ORFs and sRNAs were screened by intraperitoneal (IP) injection in BALB/c mice followed by recovery from spleen and liver 2 days post infection. The relative abundance of each mutant was measured by microarray hybridization. The two mutant libraries differed in the orientation of the antibiotic resistance cassettes (either sense-oriented Kan(R), SGD-K, or antisense-oriented Cam(R), SGD-C). Consistent systemic colonization defects were observed in both libraries and both organs for hundreds of mutants of genes previously reported to be important after IP injection in this animal model, and for about 100 new candidate genes required for systemic colonization. Four mutants with a range of apparent fitness defects were confirmed using competitive infections with the wild-type parental strain: ΔSTM0286, ΔSTM0551, ΔSTM2363, and ΔSTM3356. Two mutants, ΔSTM0286 and ΔSTM2363, were then complemented in trans with a plasmid encoding an intact copy of the corresponding wild-type gene, and regained the ability to fully colonize BALB/c mice systemically. These results suggest the presence of many more undiscovered Salmonella genes with phenotypes in IP infection of BALB/c mice, and validate the libraries for application to other systems.

Indexed as

BALB/c micedeletion mutantsIP infectionSalmonellasingle-gene deletion librarysystemic colonization

Identifiers

PMID26779130
PMCPMC4700939
OpenAlexW2223930646

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.