ArticleScientific reports2016
Comparative transcriptome analysis highlights the crucial roles of photosynthetic system in drought stress adaptation in upland rice.
Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers, 1 of them a synthesis that pooled it.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
43 citing papers in PubMed, 1 synthesis or guideline pooled it, 120 citations in OpenAlex.
- A Comparative Transcriptomic Meta-Analysis Revealed Conserved Key Genes and Regulatory Networks Involved in Drought Tolerance in Cereal Crops.International journal of molecular sciences · 2021Pooled it
- Conserved and divergent gene regulatory networks for crop drought resistance.Nature communications · 2026Article
- A chromosome-scale assembly and comparative genomics of the Yunnanopilia longistaminata.Scientific data · 2026Article
- Shoot transcriptome and co-expression network analysis of African rice cultivars identify drought-tolerance hub genes and growth stage-dependent trade-offs.Frontiers in plant science · 2026Article
- Biomarker genes for model-based prediction of drought-stress perception levels in rice.BMC plant biology · 2025Article
- Integrated Analysis of Physiological Responses and Transcriptome of Cotton Seedlings Under Drought Stress.International journal of molecular sciences · 2025Article
- Physiological changes and full-length transcriptome of Artemisia sphaerocephala in response to drought stress.BMC plant biology · 2025Article
- Characterization and Fine Mapping of the Stay-Green-Related Spot Leaf GeneInternational journal of molecular sciences · 2025Article
- Exploring the dynamic adaptive responses of Epimedium pubescens to phosphorus deficiency by Integrated transcriptome and miRNA analysis.BMC plant biology · 2024Article
- Genetic Analysis of Partially Resistant and Susceptible Chickpea Cultivars in Response toInternational journal of molecular sciences · 2024Article
- Comparative analysis of the mitochondrial genomes of fourFrontiers in plant science · 2024Article
- Functions of arbuscular mycorrhizal fungi in regulating endangered species Heptacodium miconioides growth and drought stress tolerance.Plant cell reports · 2023Article
- Panicle transcriptome of high-yield mutant indica rice reveals physiological mechanisms and novel candidate regulatory genes for yield under reproductive stage drought stress.BMC plant biology · 2023Article
- A multi-level approach reveals key physiological and molecular traits in the response of two rice genotypes subjected to water deficit at the reproductive stage.Plant-environment interactions (Hoboken, N.J.) · 2023Review
- Transcriptomics Insights into Phosphorus Stress Response ofInternational journal of molecular sciences · 2023Article
- Transcriptome analysis of brassinolide under low temperature stress in winter wheat.AoB PLANTS · 2023Article
- Drought stress in rice: morpho-physiological and molecular responses and marker-assisted breeding.Frontiers in plant science · 2023Review
- Article
- Evolution of different rice ecotypes and genetic basis of flooding adaptability in Deepwater rice by GWAS.BMC plant biology · 2022Article
- Transcriptome analysis of Auricularia fibrillifera fruit-body responses to drought stress and rehydration.BMC genomics · 2022Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Drought stress is one of the major adverse environmental factors reducing plant growth. With the aim to elucidate the underlying molecular basis of rice response to drought stress, comparative transcriptome analysis was conducted between drought susceptible rice cultivar Zhenshan97 and tolerant cultivar IRAT109 at the seedling stage. 436 genes showed differential expression and mainly enriched in the Gene Ontology (GO) terms of stress defence. A large number of variations exist between these two genotypes including 2564 high-quality insertion and deletions (INDELs) and 70,264 single nucleotide polymorphism (SNPs). 1041 orthologous gene pairs show the ratio of nonsynonymous nucleotide substitution rate to synonymous nucleotide substitutions rate (Ka/Ks) larger than 1.5, indicating the rapid adaptation to different environments during domestication. GO and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis of positive selection genes suggested that photosynthesis represents the most significant category. The collocation of positively selected genes with the QTLs of photosynthesis and the different photosynthesis performance of these two cultivars further illuminate the crucial function of photosynthesis in rice adaptation to drought stress. Our results also provide fruitful functional markers and candidate genes for future genetic research and improvement of drought tolerance in rice.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.