Evidence map›Paper›PMID 26775680›Full record

ArticleScientific reports2016

Structural understanding of the recycling of oxidized ascorbate by dehydroascorbate reductase (OsDHAR) from Oryza sativa L. japonica.

Hackwon Do, Il-Sup Kim, Byoung Wook Jeon, Chang Woo Lee, Ae Kyung Park, Ah Ram Wi, Seung Chul Shin, Hyun Park, Young-Saeng Kim, Ho-Sung Yoon and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
12.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 66 citations in OpenAlex.

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  13. Review
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  15. Expression of HeterologousFrontiers in plant science · 2020
    Article
  16. Toxins · 2019
    Review
  17. Review
  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Hackwon DoDivision of Polar Life Sciences, Korea Polar Research Institute, Incheon 406-840, Republic of Korea.
Il-Sup KimSchool of Life Sciences, BK21 Plus KNU Creative BioResearch Group, Kyungpook National University, Daegu 702-701, Republic of Korea.
Byoung Wook JeonDivision of Polar Life Sciences, Korea Polar Research Institute, Incheon 406-840, Republic of Korea.
Chang Woo LeeDivision of Polar Life Sciences, Korea Polar Research Institute, Incheon 406-840, Republic of Korea.
Ae Kyung ParkDivision of Polar Life Sciences, Korea Polar Research Institute, Incheon 406-840, Republic of Korea.
Ah Ram WiDivision of Polar Life Sciences, Korea Polar Research Institute, Incheon 406-840, Republic of Korea.
Seung Chul ShinDivision of Polar Life Sciences, Korea Polar Research Institute, Incheon 406-840, Republic of Korea.
Hyun ParkDivision of Polar Life Sciences, Korea Polar Research Institute, Incheon 406-840, Republic of Korea.
Young-Saeng KimDivision of Biological Sciences, University of California San Diego, La Jolla, California 92093-0116, USA.
Ho-Sung YoonSchool of Life Sciences, BK21 Plus KNU Creative BioResearch Group, Kyungpook National University, Daegu 702-701, Republic of Korea.
Han-Woo KimDivision of Polar Life Sciences, Korea Polar Research Institute, Incheon 406-840, Republic of Korea.
Jun Hyuck LeeDivision of Polar Life Sciences, Korea Polar Research Institute, Incheon 406-840, Republic of Korea.
Korea Polar Research Institute · KRKorea University of Science and Technology · KRKyungpook National University · KRUniversity of California, San Diego · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dehydroascorbate reductase (DHAR) is a key enzyme involved in the recycling of ascorbate, which catalyses the glutathione (GSH)-dependent reduction of oxidized ascorbate (dehydroascorbate, DHA). As a result, DHAR regenerates a pool of reduced ascorbate and detoxifies reactive oxygen species (ROS). In previous experiments involving transgenic rice, we observed that overexpression of DHAR enhanced grain yield and biomass. Since the structure of DHAR is not available, the enzymatic mechanism is not well-understood and remains poorly characterized. To elucidate the molecular basis of DHAR catalysis, we determined the crystal structures of DHAR from Oryza sativa L. japonica (OsDHAR) in the native, ascorbate-bound, and GSH-bound forms and refined their resolutions to 1.9, 1.7, and 1.7 Å, respectively. These complex structures provide the first information regarding the location of the ascorbate and GSH binding sites and their interacting residues. The location of the ascorbate-binding site overlaps with the GSH-binding site, suggesting a ping-pong kinetic mechanism for electron transfer at the common Cys20 active site. Our structural information and mutagenesis data provide useful insights into the reaction mechanism of OsDHAR against ROS-induced oxidative stress in rice.

Indexed as

Oxidation-ReductionAmino Acid SequenceAscorbic AcidBinding SitesCatalytic DomainGene ExpressionGlutathioneMetabolic Networks and PathwaysModels, MolecularMutationOryzaOxidoreductasesProtein BindingProtein ConformationReactive Oxygen SpeciesStress, PhysiologicalAscorbic AcidGlutathioneglutathione dehydrogenase (ascorbate)OxidoreductasesReactive Oxygen Species

Identifiers

PMID26775680
PMCPMC4726096
OpenAlexW2408999979

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.