Evidence map›Paper›PMID 26774823›Full record

ArticleCell2016

Evolving New Skeletal Traits by cis-Regulatory Changes in Bone Morphogenetic Proteins.

Vahan B Indjeian, Garrett A Kingman, Felicity C Jones, Catherine A Guenther, Jane Grimwood, Jeremy Schmutz, Richard M Myers, David M Kingsley

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed, 2 pooled it
12.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 2 syntheses or guidelines pooled it, 157 citations in OpenAlex.

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18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Vahan B IndjeianHoward Hughes Medical Institute; Stanford University School of Medicine, Department of Developmental Biology, 279 Campus Drive, Beckman Center B300, Stanford, CA 94305, USA.
Garrett A KingmanStanford University School of Medicine, Department of Developmental Biology, 279 Campus Drive, Beckman Center B300, Stanford, CA 94305, USA.
Felicity C JonesStanford University School of Medicine, Department of Developmental Biology, 279 Campus Drive, Beckman Center B300, Stanford, CA 94305, USA.
Catherine A GuentherHoward Hughes Medical Institute; Stanford University School of Medicine, Department of Developmental Biology, 279 Campus Drive, Beckman Center B300, Stanford, CA 94305, USA.
Jane GrimwoodHudsonAlpha Institute for Biotechnology, 601 Genome Way, Huntsville, AL 35806, USA.
Jeremy SchmutzHudsonAlpha Institute for Biotechnology, 601 Genome Way, Huntsville, AL 35806, USA.
Richard M MyersHudsonAlpha Institute for Biotechnology, 601 Genome Way, Huntsville, AL 35806, USA.
David M KingsleyHoward Hughes Medical Institute; Stanford University School of Medicine, Department of Developmental Biology, 279 Campus Drive, Beckman Center B300, Stanford, CA 94305, USA. Electronic address: kingsley@stanford.edu.
Howard Hughes Medical Institute · USHudsonAlpha Institute for Biotechnology · USStanford University · US

Funding

Genomic Basis of Vertebrate DiversityP50HG002568 · NHGRI · STANFORD UNIVERSITY · PI KINGSLEY, DAVID M · 2002 to 2011
$29.2M
Genetic Analysis of Bone Morphogenic ProteinsR37AR042236 · NIAMS · STANFORD UNIVERSITY · PI KINGSLEY, DAVID M · 2002 to 2011
$3.4M
GENETIC ANALYSIS OF BONE MORPHOGENETIC PROTEINSR01AR042236 · NIAMS · STANFORD UNIVERSITY · PI KINGSLEY, DAVID M · 1993 to 2001
$915k
Howard Hughes Medical InstituteMedical Research Council MC_UP_1102/11NHGRI NIH HHS 5P50HG2568NHGRI NIH HHS P50 HG002568NIAMS NIH HHS R01 AR042236NIAMS NIH HHS R01-AR42236NIAMS NIH HHS R37 AR042236
6 · The paper itself

Abstract

Changes in bone size and shape are defining features of many vertebrates. Here we use genetic crosses and comparative genomics to identify specific regulatory DNA alterations controlling skeletal evolution. Armor bone-size differences in sticklebacks map to a major effect locus overlapping BMP family member GDF6. Freshwater fish express more GDF6 due in part to a transposon insertion, and transgenic overexpression of GDF6 phenocopies evolutionary changes in armor-plate size. The human GDF6 locus also has undergone distinctive regulatory evolution, including complete loss of an enhancer that is otherwise highly conserved between chimps and other mammals. Functional tests show that the ancestral enhancer drives expression in hindlimbs but not forelimbs, in locations that have been specifically modified during the human transition to bipedalism. Both gain and loss of regulatory elements can localize BMP changes to specific anatomical locations, providing a flexible regulatory basis for evolving species-specific changes in skeletal form.

Indexed as

Biological EvolutionEvolution, MolecularAdaptation, PhysiologicalAnimalsEnhancer Elements, GeneticFish ProteinsFresh WaterGrowth Differentiation Factor 6HumansQuantitative Trait LociSeawaterSkeletonSmegmamorphaSpecies SpecificityVertebratesFish ProteinsGrowth Differentiation Factor 6

Identifiers

PMID26774823
PMCPMC4759241
OpenAlexW2227278846

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.