ArticleJournal of biomedical informatics2016
Classification of clinically useful sentences in clinical evidence resources.
Article in Journal of biomedical informatics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed.
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- Enhancing the coverage of SemRep using a relation classification approach.Journal of biomedical informatics · 2024Article
- Article
- Clinical Context-Aware Biomedical Text Summarization Using Deep Neural Network: Model Development and Validation.Journal of medical Internet research · 2020Article
- Broad-coverage biomedical relation extraction with SemRep.BMC bioinformatics · 2020Article
- Temporal Pattern Detection to Predict Adverse Events in Critical Care: Case Study With Acute Kidney Injury.JMIR medical informatics · 2020Article
- Using Lexical Chains to Identify Text Difficulty: A Corpus Statistics and Classification Study.IEEE journal of biomedical and health informatics · 2019Article
- Predicting the polyethylene wear rate in pin-on-disc experiments in the context of prosthetic hip implants: deriving a data-driven model using machine learning methods.Tribology international · 2019Article
- Integrating Natural Language Processing and Machine Learning Algorithms to Categorize Oncologic Response in Radiology Reports.Journal of digital imaging · 2018Article
- Making Sense of Big Textual Data for Health Care: Findings from the Section on Clinical Natural Language Processing.Yearbook of medical informatics · 2017Review
- NegAIT: A new parser for medical text simplification using morphological, sentential and double negation.Journal of biomedical informatics · 2017Article
- Mining the literature for genes associated with placenta-mediated maternal diseases.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2017Article
- The Role of Surface, Semantic and Grammatical Features on Simplification of Spanish Medical Texts: A User Study.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2017Article
- Integrating unified medical language system and association mining techniques into relevance feedback for biomedical literature search.BMC bioinformatics · 2016Article
- Classification of Clinically Useful Sentences in MEDLINE.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2015Article
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Authors and funding
5 authors.
Funding
Abstract
unlabelledMost patient care questions raised by clinicians can be answered by online clinical knowledge resources. However, important barriers still challenge the use of these resources at the point of care.
objectiveTo design and assess a method for extracting clinically useful sentences from synthesized online clinical resources that represent the most clinically useful information for directly answering clinicians' information needs. MATERIALS AND
methodsWe developed a Kernel-based Bayesian Network classification model based on different domain-specific feature types extracted from sentences in a gold standard composed of 18 UpToDate documents. These features included UMLS concepts and their semantic groups, semantic predications extracted by SemRep, patient population identified by a pattern-based natural language processing (NLP) algorithm, and cue words extracted by a feature selection technique. Algorithm performance was measured in terms of precision, recall, and F-measure.
resultsThe feature-rich approach yielded an F-measure of 74% versus 37% for a feature co-occurrence method (p<0.001). Excluding predication, population, semantic concept or text-based features reduced the F-measure to 62%, 66%, 58% and 69% respectively (p<0.01). The classifier applied to Medline sentences reached an F-measure of 73%, which is equivalent to the performance of the classifier on UpToDate sentences (p=0.62).
conclusionsThe feature-rich approach significantly outperformed general baseline methods. This approach significantly outperformed classifiers based on a single type of feature. Different types of semantic features provided a unique contribution to overall classification performance. The classifier's model and features used for UpToDate generalized well to Medline abstracts.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.