Evidence map›Paper›PMID 26774481›Full record

ArticleCell reports2016

A Genome-wide RNAi Screen for Microtubule Bundle Formation and Lysosome Motility Regulation in Drosophila S2 Cells.

Amber L Jolly, Chi-Hao Luan, Brendon E Dusel, Sara F Dunne, Michael Winding, Vishrut J Dixit, Chloe Robins, Jennifer L Saluk, David J Logan, Anne E Carpenter and 4 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. High-Throughput, Automated Image Processing for Large-Scale Fluorescence Microscopy Experiments.Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Amber L JollyDepartment of Cell and Molecular Biology, Northwestern University, Chicago, IL 60611, USA; Children's Hospital Oakland Research Institute, Oakland, CA 94609, USA.
Chi-Hao LuanHigh Throughput Analysis Laboratory, Northwestern University, Evanston, IL 60208, USA.
Brendon E DuselHigh Throughput Analysis Laboratory, Northwestern University, Evanston, IL 60208, USA.
Sara F DunneHigh Throughput Analysis Laboratory, Northwestern University, Evanston, IL 60208, USA.
Michael WindingDepartment of Cell and Molecular Biology, Northwestern University, Chicago, IL 60611, USA.
Vishrut J DixitDepartment of Cell and Molecular Biology, Northwestern University, Chicago, IL 60611, USA.
Chloe RobinsHigh Throughput Analysis Laboratory, Northwestern University, Evanston, IL 60208, USA.
Jennifer L SalukHigh Throughput Analysis Laboratory, Northwestern University, Evanston, IL 60208, USA.
David J LoganImaging Platform, Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA.
Anne E CarpenterImaging Platform, Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA.
Manu SharmaChildren's Hospital Oakland Research Institute, Oakland, CA 94609, USA.
Deborah DeanChildren's Hospital Oakland Research Institute, Oakland, CA 94609, USA.
Andrew R CohenDepartment of Electrical and Computer Engineering, Drexel University, Philadelphia, PA 19104, USA. Electronic address: acohen@coe.drexel.edu.
Vladimir I GelfandDepartment of Cell and Molecular Biology, Northwestern University, Chicago, IL 60611, USA. Electronic address: vgelfand@northwestern.edu.
Northwestern University · USBroad Institute · USDrexel University · US

Funding

Tumor Environment and Metastasis (TEAM) Research ProgramP30CA060553 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Daniela E Matei · 1993 to 2026
$153.9M
REGULATION OF MYOSIN DRIVEN ORGANELLE TRANSPORTR01GM052111 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI GELFAND, VLADIMIR I · 1999 to 2018
$8.3M
Continued Development of CellProfiler Cell Image Analysis SoftwareR01GM089652 · NIGMS · BROAD INSTITUTE, INC. · PI CARPENTER, ANNE E. · 2010 to 2016
$3.7M
NCI NIH HHS P30 CA060553NIGMS NIH HHS R01 GM052111NIGMS NIH HHS R01 GM089652
6 · The paper itself

Abstract

Long-distance intracellular transport of organelles, mRNA, and proteins ("cargo") occurs along the microtubule cytoskeleton by the action of kinesin and dynein motor proteins, but the vast network of factors involved in regulating intracellular cargo transport are still unknown. We capitalize on the Drosophila melanogaster S2 model cell system to monitor lysosome transport along microtubule bundles, which require enzymatically active kinesin-1 motor protein for their formation. We use an automated tracking program and a naive Bayesian classifier for the multivariate motility data to analyze 15,683 gene phenotypes and find 98 proteins involved in regulating lysosome motility along microtubules and 48 involved in the formation of microtubule filled processes in S2 cells. We identify innate immunity genes, ion channels, and signaling proteins having a role in lysosome motility regulation and find an unexpected relationship between the dynein motor, Rab7a, and lysosome motility regulation.

Indexed as

GenomeAnimalsBayes TheoremCells, CulturedDrosophilaDrosophila ProteinsDyneinsLysosomesMicrotubulesPhenotyperab7 GTP-Binding Proteinsrab GTP-Binding ProteinsRNA, Double-StrandedRNA InterferenceTime-Lapse ImagingDrosophila ProteinsDyneinsrab7 GTP-Binding Proteinsrab GTP-Binding ProteinsRNA, Double-Stranded

Identifiers

PMID26774481
PMCPMC4868501
OpenAlexW2227205887

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.