Evidence map›Paper›PMID 26774474›Full record

ArticleCell reports2016

Deposition of 5-Methylcytosine on Enhancer RNAs Enables the Coactivator Function of PGC-1α.

Francesca Aguilo, SiDe Li, Natarajan Balasubramaniyan, Ana Sancho, Sabina Benko, Fan Zhang, Ajay Vashisht, Madhumitha Rengasamy, Blanca Andino, Chih-Hung Chen and 7 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 108 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
108citing papers in PubMed, 1 pooled it
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

108 citing papers in PubMed, 1 synthesis or guideline pooled it, 230 citations in OpenAlex.

  1. Pooled it
  2. Coordinated DNA 5-mC and RNA mExperimental & molecular medicine · 2026
    Article
  3. Review
  4. Interplay of RNA mFASEB bioAdvances · 2026
    Article
  5. mBiology direct · 2026
    Review
  6. Review
  7. Aberrant NSUN1 activity connects mLife science alliance · 2026
    Article
  8. Review
  9. NSUN7 is a catalytically inactive RNA mNature communications · 2025
    Article
  10. Review
  11. Review
  12. Review
  13. Review
  14. Review
  15. Review
  16. Article
  17. Article
  18. Global Co-regulatory Cross Talk Between mMolecular neurobiology · 2025
    Article
  19. Review
  20. Article

48 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 2 countries.

Francesca AguiloDepartment of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA; Department of Structural and Chemical Biology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
SiDe LiDepartment of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Natarajan BalasubramaniyanChildren's Hospital Research Institute of Colorado, University of Colorado School of Medicine, Aurora, CO 80045, USA.
Ana SanchoDepartment of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA; Department of Structural and Chemical Biology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Sabina BenkoDepartment of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA; Department of Structural and Chemical Biology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Fan ZhangDivision of Nephrology, Department of Medicine, Laboratory of Bioinformatics, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Ajay VashishtDepartment of Biological Chemistry and Institute of Genomics and Proteomics, University of California, Los Angeles, Los Angeles, CA 90095, USA.
Madhumitha RengasamyDepartment of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA; Department of Structural and Chemical Biology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Blanca AndinoDepartment of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA; Department of Structural and Chemical Biology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Chih-Hung ChenDepartment of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA; Department of Structural and Chemical Biology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Felix ZhouDepartment of Structural and Chemical Biology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Chengmin QianDepartment of Biochemistry, Lin Ka Shing Faculty of Medicine, University of Hong Kong, Hong Kong, PRC.
Ming-Ming ZhouDepartment of Structural and Chemical Biology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
James A WohlschlegelDepartment of Biological Chemistry and Institute of Genomics and Proteomics, University of California, Los Angeles, Los Angeles, CA 90095, USA.
Weijia ZhangDivision of Nephrology, Department of Medicine, Laboratory of Bioinformatics, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Frederick J SuchyChildren's Hospital Research Institute of Colorado, University of Colorado School of Medicine, Aurora, CO 80045, USA.
Martin J WalshDepartment of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA; Department of Structural and Chemical Biology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA; Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA. Electronic address: martin.walsh@mssm.edu.
Icahn School of Medicine at Mount Sinai · USUniversity of California, Los Angeles · USChildren's Hospital Colorado · USUniversity of Colorado Denver · USUniversity of Hong Kong · HK

Funding

STRUCTURE OF PROTEIN MODULES IN CHROMATIN REMODELINGR01CA087658 · NCI · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI ZHOU, MING-MING · 2000 to 2016
$4.8M
Proteolytic Control of Iron Metabolism by the Ubiquitin Ligase FBXL5R01GM089778 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI WOHLSCHLEGEL, JAMES AKIRA · 2010 to 2023
$4.0M
Mechanism of BET Proteins in Th17 Cell DifferentiationR01AI124465 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI ZHOU, MING-MING · 2016 to 2020
$2.9M
Non-coding RNAs for Epigenetic Transcriptional Silencing in Prostate CancerR01CA154809 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI WALSH, MARTIN JOHN, ZHOU, MING-MING · 2011 to 2015
$2.5M
Epigenetic regulation of liver transportersR01DK084434 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI SUCHY, FREDERICK J · 2009 to 2013
$2.1M
Chromatin Dynamics of the CFTR locusR01HL103967 · NHLBI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI WALSH, MARTIN JOHN · 2011 to 2014
$1.9M
New Epigenetic Gene Silencing TechnologyR01GM119189 · NIGMS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI WALSH, MARTIN JOHN, ZHOU, MING-MING · 2016 to 2019
$1.8M
Regulation of CFTR gene expressionR01HL067099 · NHLBI · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI WALSH, MARTIN JOHN · 2001 to 2004
$1.2M
A Novel Epigenetic Gene Silencing TechnologyRC1DA028776 · NIDA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI WALSH, MARTIN JOHN, ZHOU, MING-MING · 2009 to 2010
$977k
NCI NIH HHS CA154903NCI NIH HHS R01 CA087658NCI NIH HHS R01 CA154809NHLBI NIH HHS HL067099NHLBI NIH HHS HL103967NHLBI NIH HHS R01 HL067099NHLBI NIH HHS R01 HL103967NIAID NIH HHS R01 AI124465NIDA NIH HHS RC1 DA028776NIDDK NIH HHS DK084434NIDDK NIH HHS R01 DK084434NIGMS NIH HHS R01 GM089778NIGMS NIH HHS R01 GM119189
6 · The paper itself

Abstract

The Peroxisome proliferator-activated receptor-gamma coactivator 1 alpha (PGC-1α) is a transcriptional co-activator that plays a central role in adapted metabolic responses. PGC-1α is dynamically methylated and unmethylated at the residue K779 by the methyltransferase SET7/9 and the Lysine Specific Demethylase 1A (LSD1), respectively. Interactions of methylated PGC-1α[K779me] with the Spt-Ada-Gcn5-acetyltransferase (SAGA) complex, the Mediator members MED1 and MED17, and the NOP2/Sun RNA methytransferase 7 (NSUN7) reinforce transcription, and are concomitant with the m(5)C mark on enhancer RNAs (eRNAs). Consistently, loss of Set7/9 and NSun7 in liver cell model systems resulted in depletion of the PGC-1α target genes Pfkl, Sirt5, Idh3b, and Hmox2, which was accompanied by a decrease in the eRNAs levels associated with these loci. Enrichment of m(5)C within eRNA species coincides with metabolic stress of fasting in vivo. Collectively, these findings illustrate the complex epigenetic circuitry imposed by PGC-1α at the eRNA level to fine-tune energy metabolism.

Indexed as

5-MethylcytosineAnimalsBase SequenceCell LineEnhancer Elements, GeneticHEK293 CellsHeme Oxygenase (Decyclizing)HumansIsocitrate DehydrogenaseMethyltransferasesMiceNIH 3T3 CellsPeroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alphaPhosphofructokinase-1Promoter Regions, GeneticRNA Interference5-Methylcytosineheme oxygenase-2Heme Oxygenase (Decyclizing)Isocitrate Dehydrogenaseisocitrate dehydrogenase 3, mouseMethyltransferasesNsun7 protein, mousePeroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alphaPhosphofructokinase-1Ppargc1a protein, mouseRNA, MessengerRNA, Small InterferingSirt1 protein, mouseSIRT5 protein, mouseSirtuin 1SirtuinsTranscription Factors

Identifiers

PMID26774474
PMCPMC4731243
OpenAlexW2231633301

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.