Evidence map›Paper›PMID 26771356›Full record

ArticleStem cell reports2016

High-Content Analysis of CRISPR-Cas9 Gene-Edited Human Embryonic Stem Cells.

Jared Carlson-Stevermer, Madelyn Goedland, Benjamin Steyer, Arezoo Movaghar, Meng Lou, Lucille Kohlenberg, Ryan Prestil, Krishanu Saha

Abstract read
In one paragraph

Article in Stem cell reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Review
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  17. Article
  18. The Nexus of Stem Cell-Derived Beta-Cells and Genome Engineering.The review of diabetic studies : RDS · 2017
    Review
  19. Article
  20. Site-Specific Genome Engineering in Human Pluripotent Stem Cells.International journal of molecular sciences · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Jared Carlson-StevermerWisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI 53715, USA; Department of Biomedical Engineering, University of Wisconsin-Madison, Madison, WI 53715, USA.
Madelyn GoedlandWisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI 53715, USA; Department of Biomedical Engineering, University of Wisconsin-Madison, Madison, WI 53715, USA.
Benjamin SteyerWisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI 53715, USA.
Arezoo MovagharWisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI 53715, USA; Department of Biomedical Engineering, University of Wisconsin-Madison, Madison, WI 53715, USA.
Meng LouWisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI 53715, USA.
Lucille KohlenbergWisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI 53715, USA.
Ryan PrestilWisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI 53715, USA.
Krishanu SahaWisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI 53715, USA; Department of Biomedical Engineering, University of Wisconsin-Madison, Madison, WI 53715, USA; Department of Medical History and Bioethics, University of Wisconsin-Madison, Madison, WI 53715, USA. Electronic address: ksaha@wisc.edu.

Funding

Institutional Training in the Genomic SciencesT32HG002760 · NHGRI · UNIVERSITY OF WISCONSIN-MADISON · PI Qiongshi Lu · 2003 to 2026
$17.7M
INTEGRATED TRAINING FOR PHYSICIAN-SCIENTISTST32GM008692 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BURKARD, MARK E · 1998 to 2020
$10.3M
NHGRI NIH HHS 5T32HG002760NHGRI NIH HHS T32 HG002760NIGMS NIH HHS T32 GM008692NIGMS NIH HHS T32GM008692-16
6 · The paper itself

Abstract

CRISPR-Cas9 gene editing of human cells and tissues holds much promise to advance medicine and biology, but standard editing methods require weeks to months of reagent preparation and selection where much or all of the initial edited samples are destroyed during analysis. ArrayEdit, a simple approach utilizing surface-modified multiwell plates containing one-pot transcribed single-guide RNAs, separates thousands of edited cell populations for automated, live, high-content imaging and analysis. The approach lowers the time and cost of gene editing and produces edited human embryonic stem cells at high efficiencies. Edited genes can be expressed in both pluripotent stem cells and differentiated cells. This preclinical platform adds important capabilities to observe editing and selection in situ within complex structures generated by human cells, ultimately enabling optical and other molecular perturbations in the editing workflow that could refine the specificity and versatility of gene editing.

Indexed as

CRISPR-Cas SystemsBase SequenceCell DifferentiationCell LineCell ProliferationGene Expression Regulation, DevelopmentalGene TargetingGenome, HumanHigh-Throughput Nucleotide SequencingHuman Embryonic Stem CellsHumansMolecular Sequence DataPluripotent Stem CellsReproducibility of ResultsTime Factors

Identifiers

PMID26771356
PMCPMC4720027

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.