Evidence map›Paper›PMID 26769964›Full record

ArticleThe Journal of biological chemistry2016

Structural Basis of Cyclic Nucleotide Selectivity in cGMP-dependent Protein Kinase II.

James C Campbell, Jeong Joo Kim, Kevin Y Li, Gilbert Y Huang, Albert S Reger, Shinya Matsuda, Banumathi Sankaran, Todd M Link, Keizo Yuasa, John E Ladbury and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Cyclic nucleotide selectivity of protein kinase G isozymes.Protein science : a publication of the Protein Society · 2021
    Review
  3. Article
  4. CUTie2: The Attack of the Cyclic Nucleotide Sensor Clones.Frontiers in molecular biosciences · 2021
    Article
  5. Article
  6. Structures of the cGMP-dependent protein kinase in malaria parasites reveal a unique structural relay mechanism for activation.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 8 institutions in 4 countries.

James C CampbellFrom the Structural and Computational Biology and Molecular Biophysics Program.
Jeong Joo KimDepartment of Pharmacology, and; the Department of Biochemistry, University of Kassel, Kassel, Hesse 34132, Germany.
Kevin Y Lithe Department of Biochemistry & Cell Biology, Rice University, Houston, Texas 77005.
Gilbert Y HuangVerna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, Texas 77030.
Albert S RegerDepartment of Pharmacology, and.
Shinya Matsudathe Department of Biological Science and Technology, the University of Tokushima Graduate School, Tokushima 770-8506, Japan.
Banumathi Sankaranthe Berkeley Center for Structural Biology, Lawrence Berkeley National Laboratory, Berkeley, California 94720.
Todd M Linkthe Department of Biochemistry and Molecular Biology, The University of Texas M.D. Anderson Cancer Center, Houston, Texas 77030, and.
Keizo Yuasathe Department of Biological Science and Technology, the University of Tokushima Graduate School, Tokushima 770-8506, Japan.
John E LadburyFrom the Structural and Computational Biology and Molecular Biophysics Program,; the Department of Biochemistry and Molecular Biology, The University of Texas M.D. Anderson Cancer Center, Houston, Texas 77030, and.
Darren E Casteelthe Department of Medicine, University of California, San Diego, La Jolla, California 92093.
Choel KimFrom the Structural and Computational Biology and Molecular Biophysics Program,; Department of Pharmacology, and; Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, Texas 77030,. Electronic address: ckim@bcm.edu.
Institute of Molecular Biology and Biophysics · RUTokushima University · JPBaylor College of Medicine · USLawrence Berkeley National Laboratory · USRice University · USThe University of Texas MD Anderson Cancer Center · USUniversity of California, San Diego · USUniversity of Kassel · DE

Funding

Initiative for Maximizing Student Development (IMSD) ProgramR25GM056929 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI PEREIRA, FRED A · 1998 to 2023
$12.4M
HOUSTON AREA MOLECULAR BIOPHYSICS TRAINING PROGRAMT32GM008280 · NIGMS · RICE UNIVERSITY · PI WENSEL, THEODORE G · 1988 to 2023
$8.0M
Targeting mechanisms of cGMP dependent protein kinases by peptide arrays and crysR01GM090161 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI KIM, CHOEL WOONG · 2010 to 2018
$2.9M
Training in Pharmacological SciencesT32GM089657 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI HANCOCK, JOHN F · 2010 to 2014
$728k
Howard Hughes Medical InstituteNIGMS NIH HHS 2R01GM090161NIGMS NIH HHS R01 GM090161NIGMS NIH HHS R25 GM056929NIGMS NIH HHS T32 GM008280NIGMS NIH HHS T32GM008280NIGMS NIH HHS T32 GM089657
6 · The paper itself

Abstract

Membrane-bound cGMP-dependent protein kinase (PKG) II is a key regulator of bone growth, renin secretion, and memory formation. Despite its crucial physiological roles, little is known about its cyclic nucleotide selectivity mechanism due to a lack of structural information. Here, we find that the C-terminal cyclic nucleotide binding (CNB-B) domain of PKG II binds cGMP with higher affinity and selectivity when compared with its N-terminal CNB (CNB-A) domain. To understand the structural basis of cGMP selectivity, we solved co-crystal structures of the CNB domains with cyclic nucleotides. Our structures combined with mutagenesis demonstrate that the guanine-specific contacts at Asp-412 and Arg-415 of the αC-helix of CNB-B are crucial for cGMP selectivity and activation of PKG II. Structural comparison with the cGMP selective CNB domains of human PKG I and Plasmodium falciparum PKG (PfPKG) shows different contacts with the guanine moiety, revealing a unique cGMP selectivity mechanism for PKG II.

Indexed as

Allosteric RegulationAnimalsChlorocebus aethiopsCOS CellsCrystallography, X-RayCyclic AMPCyclic GMPCyclic GMP-Dependent Protein Kinase Type IIHEK293 CellsHumansModels, MolecularProtein Structure, TertiarySubstrate SpecificityCyclic AMPCyclic GMPCyclic GMP-Dependent Protein Kinase Type IIallosteric regulationcGMP-dependent protein kinasecyclic nucleotidecyclic nucleotide-binding domain (CNB)ligand-binding proteinNO-cGMP signalingprotein kinase G (PKG)receptor structure-functionsecond messengerserine/threonine protein kinaseX-ray crystallography

Identifiers

PMID26769964
PMCPMC4786703
OpenAlexW2238683062

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.