Evidence map›Paper›PMID 26769962›Full record

ArticleThe Journal of biological chemistry2016

REH2C Helicase and GRBC Subcomplexes May Base Pair through mRNA and Small Guide RNA in Kinetoplastid Editosomes.

Vikas Kumar, Bhaskara R Madina, Shelly Gulati, Ajay A Vashisht, Chiedza Kanyumbu, Brittany Pieters, Afzal Shakir, James A Wohlschlegel, Laurie K Read, Blaine H M Mooers and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Vikas KumarFrom the Department of Biochemistry and Biophysics, Texas A&M University, College Station, Texas 77843.
Bhaskara R MadinaFrom the Department of Biochemistry and Biophysics, Texas A&M University, College Station, Texas 77843.
Shelly Gulatithe Department of Biochemistry and Molecular Biology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma 73104.
Ajay A Vashishtthe Department of Biological Chemistry, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, California 90095.
Chiedza Kanyumbuthe Department of Biochemistry and Molecular Biology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma 73104.
Brittany PietersFrom the Department of Biochemistry and Biophysics, Texas A&M University, College Station, Texas 77843.
Afzal Shakirthe Department of Biochemistry and Molecular Biology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma 73104.
James A Wohlschlegelthe Department of Biological Chemistry, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, California 90095.
Laurie K Readthe Department of Microbiology and Immunology, University of Buffalo School of Medicine, Buffalo, New York, and.
Blaine H M Mooersthe Department of Biochemistry and Molecular Biology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma 73104.
Jorge Cruz-ReyesFrom the Department of Biochemistry and Biophysics, Texas A&M University, College Station, Texas 77843,. Electronic address: cruzrey@tamu.edu.
Texas A&M University · USUniversity of Oklahoma Health Sciences Center · USUniversity of California, Los Angeles · USUniversity at Buffalo, State University of New York · US

Funding

Structure-Function Studies of MsvR, a Methanogen-Specific Transcriptional RegulaP20GM103640 · NIGMS · UNIVERSITY OF OKLAHOMA · PI THOMAS, LEONARD M · 2012 to 2021
$20.4M
Proteolytic Control of Iron Metabolism by the Ubiquitin Ligase FBXL5R01GM089778 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI WOHLSCHLEGEL, JAMES AKIRA · 2010 to 2023
$4.0M
Regulation of RNA editing in Trypansoma bruceiR01AI061580 · NIAID · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI READ, LAURIE K. · 2006 to 2015
$3.0M
The role of non-canonical base pairs in RNA editingR01AI088011 · NIAID · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI MOOERS, BLAINE H. M. · 2012 to 2015
$1.4M
NIAID NIH HHS R01 AI061580NIAID NIH HHS R01 AI088011NIGMS NIH HHS P20 GM103640NIGMS NIH HHS R01 GM089778
6 · The paper itself

Abstract

Mitochondrial mRNAs in Trypanosoma brucei undergo extensive insertion and deletion of uridylates that are catalyzed by the RNA editing core complex (RECC) and directed by hundreds of small guide RNAs (gRNAs) that base pair with mRNA. RECC is largely RNA-free, and accessory mitochondrial RNA-binding complex 1 (MRB1) variants serve as scaffolds for the assembly of mRNA-gRNA hybrids and RECC. However, the molecular steps that create higher-order holoenzymes ("editosomes") are unknown. Previously, we identified an RNA editing helicase 2-associated subcomplex (REH2C) and showed that REH2 binds RNA. Here we showed that REH2C is an mRNA-associated ribonucleoprotein (mRNP) subcomplex with editing substrates, intermediates, and products. We isolated this mRNP from mitochondria lacking gRNA-bound RNP (gRNP) subcomplexes and identified REH2-associated cofactors 1 and 2 ((H2)F1 and (H2)F2). (H2)F1 is an octa-zinc finger protein required for mRNP-gRNP docking, pre-mRNA and RECC loading, and RNP formation with a short synthetic RNA duplex. REH2 and other eukaryotic DEAH/RHA-type helicases share a conserved regulatory C-terminal domain cluster that includes an oligonucleotide-binding fold. Recombinant REH2 and (H2)F1 constructs associate in a purified complex in vitro. We propose a model of stepwise editosome assembly that entails controlled docking of mRNP and gRNP modules via specific base pairing between their respective mRNA and gRNA cargo and regulatory REH2 and (H2)F1 subunits of the novel mRNP that may control specificity checkpoints in the editing pathway.

Indexed as

RNA EditingAnimalsBase PairingCattleModels, MolecularProtein Structure, TertiaryProtozoan ProteinsRibonucleoproteinsRNA, Guide, KinetoplastidaRNA HelicasesRNA, MessengerTrypanosoma brucei bruceiTrypanosomiasis, BovineProtozoan ProteinsRibonucleoproteinsRNA, Guide, KinetoplastidaRNA HelicasesRNA, MessengerDEAH/RHA proteinseditosomemitochondriaREH2RNA editingRNA helicaseRNA processingRNP subcomplexessmall guide RNATrypanosoma brucei

Identifiers

PMID26769962
PMCPMC4786712
OpenAlexW2234084586

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.