Evidence map›Paper›PMID 26767091›Full record

ArticleStandards in genomic sciences2016

High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775(T), a plant pathogen of French bean pods.

Yana Aizenberg-Gershtein, Ido Izhaki, Alla Lapidus, Alex Copeland, Tbk Reddy, Marcel Huntemann, Manoj Pillay, Victor Markowitz, Markus Göker, Tanja Woyke and 3 more

Abstract readCase Reports
PubMed Full text at PMC Publisher
In one paragraph

Article in Standards in genomic sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Draft genome ofPeerJ · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Yana Aizenberg-GershteinDepartment of Evolutionary and Environmental Biology, Faculty of Natural Sciences, University of Haifa, Haifa, Israel.
Ido IzhakiDepartment of Evolutionary and Environmental Biology, Faculty of Natural Sciences, University of Haifa, Haifa, Israel.
Alla LapidusCentre for Algorithmic Biotechnology, St. Petersburg State University, St. Petersburg, Russia ; Algorithmic Biology Laboratory, St. Petersburg Academic University, St. Petersburg, Russia.
Alex CopelandDepartment of Energy Joint Genome Institute, Genome Biology Program, Walnut Creek, CA USA.
Tbk ReddyDepartment of Energy Joint Genome Institute, Genome Biology Program, Walnut Creek, CA USA.
Marcel HuntemannDepartment of Energy Joint Genome Institute, Genome Biology Program, Walnut Creek, CA USA.
Manoj PillayBiological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, CA USA.
Victor MarkowitzBiological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, CA USA.
Markus GökerLeibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Tanja WoykeDepartment of Energy Joint Genome Institute, Genome Biology Program, Walnut Creek, CA USA.
Hans-Peter KlenkSchool of Biology, Newcastle University, Newcastle upon Tyne, UK.
Nikos C KyrpidesDepartment of Energy Joint Genome Institute, Genome Biology Program, Walnut Creek, CA USA ; Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia.
Malka HalpernDepartment of Evolutionary and Environmental Biology, Faculty of Natural Sciences, University of Haifa, Haifa, Israel ; Department of Biology and Environment, Faculty of Natural Sciences, University of Haifa, Oranim, Kiryat Tivon, Israel.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phaseolibacter flectens strain ATCC 12775(T) (Halpern et al., Int J Syst Evol Microbiol 63:268-273, 2013) is a Gram-negative, rod shaped, motile, aerobic, chemoorganotroph bacterium. Ph. flectens is as a plant-pathogenic bacterium on pods of French bean and was first identified by Johnson (1956) as Pseudomonas flectens. After its phylogenetic position was reexamined, Pseudomonas flectens was transferred to the family Enterobacteriaceae as Phaseolibacter flectens gen. nov., comb. nov. Here we describe the features of this organism, together with the draft genome sequence and annotation. The DNA GC content is 44.34 mol%. The chromosome length is 2,748,442 bp. It encodes 2,437 proteins and 89 RNA genes. Ph. flectens genome is part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes study.

Indexed as

EnterobacteriaceaeFrench bean podPhaseolibacter flectensPhaseolus vulgarisplant pathogen

Identifiers

PMID26767091
PMCPMC4710985

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.