Evidence map›Paper›PMID 26767090›Full record

ArticleStandards in genomic sciences2016

Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland.

Dwi Susanti, Eric F Johnson, Alla Lapidus, James Han, T B K Reddy, Manoj Pilay, Natalia N Ivanova, Victor M Markowitz, Tanja Woyke, Nikos C Kyrpides and 1 more

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PubMed Full text at PMC Publisher
In one paragraph

Article in Standards in genomic sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 6 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Dwi SusantiDepartment of Biochemistry, Virginia Tech, Blacksburg, VA 24061 USA.
Eric F JohnsonBiocomplexity Institute, Virginia Tech, Blacksburg, VA 24061 USA.
Alla LapidusCentre for Algorithmic Biotechnology, St. Petersburg State University, St. Petersburg, Russia ; Algorithmic Biology Lab, St. Petersburg Academic University, St. Petersburg, Russia.
James HanUS DOE Joint Genome Institute, Walnut Creek, California 94598 USA.
T B K ReddyUS DOE Joint Genome Institute, Walnut Creek, California 94598 USA.
Manoj PilayBiological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California USA.
Natalia N IvanovaUS DOE Joint Genome Institute, Walnut Creek, California 94598 USA.
Victor M MarkowitzBiological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California USA.
Tanja WoykeUS DOE Joint Genome Institute, Walnut Creek, California 94598 USA.
Nikos C KyrpidesUS DOE Joint Genome Institute, Walnut Creek, California 94598 USA ; Department of Biology, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia.
Biswarup MukhopadhyayDepartment of Biochemistry, Virginia Tech, Blacksburg, VA 24061 USA ; Biocomplexity Institute, Virginia Tech, Blacksburg, VA 24061 USA ; Department of Biological Sciences, Virginia Tech, Blacksburg, VA 24061 USA.
Joint Genome Institute · USVirginia Tech · USLawrence Berkeley National Laboratory · USSt Petersburg University · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This report presents the permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, an obligate anaerobic hyperthermophilic crenarchaeon that was isolated from acidic hot springs in Hveravellir, Iceland. D. mobilis utilizes peptides as carbon and energy sources and reduces elemental sulfur to H2S. A metabolic construction derived from the draft genome identified putative pathways for peptide degradation and sulfur respiration in this archaeon. Existence of several hydrogenase genes in the genome supported previous findings that H2 is produced during the growth of D. mobilis in the absence of sulfur. Interestingly, genes encoding glucose transport and utilization systems also exist in the D. mobilis genome though this archaeon does not utilize carbohydrate for growth. The draft genome of D. mobilis provides an additional mean for comparative genomic analysis of desulfurococci. In addition, our analysis on the Average Nucleotide Identity between D. mobilis and Desulfurococcus mucosus suggested that these two desulfurococci are two different strains of the same species.

Indexed as

Acidic hot springDesulfurococcusSulfur-reducing crenarchaeonThermophile

Identifiers

PMID26767090
PMCPMC4711178
OpenAlexW2240086054

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.