Evidence map›Paper›PMID 26765812›Full record

ReviewBiochimie2016

Vitamin B6 nutritional status and cellular availability of pyridoxal 5'-phosphate govern the function of the transsulfuration pathway's canonical reactions and hydrogen sulfide production via side reactions.

Jesse F Gregory, Barbara N DeRatt, Luisa Rios-Avila, Maria Ralat, Peter W Stacpoole

2 registry-linked trialsOpen access · greenAbstract readReview
In one paragraph

Review in Biochimie, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to 2 registered trials, which are not on this map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
3.3field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT00877812 nacompletednot on this map

Vitamin B6 Dependence of One-Carbon Metabolism

TypeinterventionalSponsorUniversity of FloridaRan2008 to 2010Enrolled45ConditionsVitamin B6 DeficiencyArmsArm 1 glycine and leucine, Arm 2 Intervention of Serine and methionine infusion
NCT01128244 phase2 / phase3completednot on this map

Vitamin B6 Effects on One-Carbon Metabolism

TypeinterventionalSponsorUniversity of FloridaRan2010 to 2014Enrolled13ConditionsVitamin B6 DeficiencyArmsVitamin B6, Infusion of labeled serine, methionine and leucine
3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 48 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Jesse F GregoryFood Science and Human Nutrition Department, University of Florida, Gainesville, FL 32611-0370, USA. Electronic address: jfgy@ufl.edu.
Barbara N DeRattFood Science and Human Nutrition Department, University of Florida, Gainesville, FL 32611-0370, USA.
Luisa Rios-AvilaFood Science and Human Nutrition Department, University of Florida, Gainesville, FL 32611-0370, USA.
Maria RalatFood Science and Human Nutrition Department, University of Florida, Gainesville, FL 32611-0370, USA.
Peter W StacpooleDivision of Endocrinology and Metabolism, Departments of Biochemistry and Medicine, College of Medicine, University of Florida, Gainesville, FL, USA.
University of Florida · US

Funding

Using social networks to map and evaluate team science across CTSA hubsUL1TR001427 · NCATS · UNIVERSITY OF FLORIDA · PI MITCHELL, DUANE A. · 2015 to 2024
$37.2M
UF CLINICAL AND TRANSLATIONAL SCIENCE AWARDUL1RR029890 · NCRR · UNIVERSITY OF FLORIDA · PI NELSON, DAVID R · 2009 to 2011
$14.4M
Vitamin B6 Effects on One-Carbon MetabolismR01DK072398 · NIDDK · UNIVERSITY OF FLORIDA · PI GREGORY, JESSE F. · 2005 to 2013
$3.3M
NCATS NIH HHS UL1 TR001427NCRR NIH HHS UL1 RR029890NIDDK NIH HHS R01 DK072398
6 · The paper itself

Abstract

The transsulfuration pathway (TS) acts in sulfur amino acid metabolism by contributing to the regulation of cellular homocysteine, cysteine production, and the generation of H2S for signaling functions. Regulation of TS pathway kinetics involves stimulation of cystathionine β-synthase (CBS) by S-adenosylmethionine (SAM) and oxidants such as H2O2, and by Michaelis-Menten principles whereby substrate concentrations affect reaction rates. Although pyridoxal phosphate (PLP) serves as coenzyme for both CBS and cystathionine γ-lyase (CSE), CSE exhibits much greater loss of activity than CBS during PLP insufficiency. Thus, cellular and plasma cystathionine concentrations increase in vitamin B6 deficiency mainly due to the bottleneck caused by reduced CSE activity. Because of the increase in cystathionine, the canonical production of cysteine (homocysteine → cystathionine → cysteine) is largely maintained even during vitamin B6 deficiency. Typical whole body transsulfuration flux in humans is 3-7 μmol/h per kg body weight. The in vivo kinetics of H2S production via side reactions of CBS and CSE in humans are unknown but they have been reported for cultured HepG2 cells. In these studies, cells exhibit a pronounced reduction in H2S production capacity and rates of lanthionine and homolanthionine synthesis in deficiency. In humans, plasma concentrations of lanthionine and homolanthionine exhibit little or no mean change due to 4-wk vitamin B6 restriction, nor do they respond to pyridoxine supplementation of subjects in chronically low-vitamin B6 status. Wide individual variation in responses of the H2S biomarkers to such perturbations of human vitamin B6 status suggests that the resulting modulation of H2S production may have physiological consequences in a subset of people. Supported by NIH grant DK072398. This paper refers to data from studies registered at clinicaltrials.gov as NCT01128244 and NCT00877812.

Indexed as

Nutritional StatusAnimalsClinical Trials as TopicFemaleHep G2 CellsHumansHydrogen SulfideMalePyridoxal PhosphateVitamin B 6Hydrogen SulfidePyridoxal PhosphateVitamin B 6Cystathionine β-synthaseCystathionine γ-lyaseHomolanthionineHydrogen sulfideLanthionineOne-carbon metabolismTranssulfurationVitamin B(6)

Identifiers

PMID26765812
PMCPMC4899128
OpenAlexW2224187131

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.