Evidence map›Paper›PMID 26765636›Full record

ArticleEnvironmental and molecular mutagenesis2016

Functional single nucleotide polymorphism in IL-17A 3' untranslated region is targeted by miR-4480 in vitro and may be associated with age-related macular degeneration.

Nicholas A Popp, Dianke Yu, Bridgett Green, Emily Y Chew, Baitang Ning, Chi-Chao Chan, Jingsheng Tuo

Abstract read
In one paragraph

Article in Environmental and molecular mutagenesis, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Nicholas A PoppLaboratory of Immunology, National Eye Institute, National Institutes of Health, Bethesda, Maryland.
Dianke YuUS Food and Drug Administration, National Center for Toxicological Research, Jefferson, Arkansas.
Bridgett GreenUS Food and Drug Administration, National Center for Toxicological Research, Jefferson, Arkansas.
Emily Y ChewDivision of Epidemiology and Clinical Applications, National Eye Institute, National Institutes of Health, Bethesda, Maryland.
Baitang NingUS Food and Drug Administration, National Center for Toxicological Research, Jefferson, Arkansas.
Chi-Chao ChanLaboratory of Immunology, National Eye Institute, National Institutes of Health, Bethesda, Maryland.
Jingsheng TuoLaboratory of Immunology, National Eye Institute, National Institutes of Health, Bethesda, Maryland.
National Institutes of Health · USNational Center for Toxicological Research · USUnited States Food and Drug Administration · US

Funding

Age-Related Macular Degeneration: Genetic Variations and Animal ModelZIAEY000418 · NEI · NATIONAL EYE INSTITUTE · PI CHAN, CHI-CHAO · 2009 to 2015
$6.0M
Genetic Variations and Age-Related Macular DegenerationZ01EY000418 · NEI · NATIONAL EYE INSTITUTE · PI CHAN, CHI-CHAO · 2004 to 2008
$3.4M
Intramural FDA HHS FD999999Intramural NIH HHS Z01 EY000418Intramural NIH HHS ZIA EY000418
6 · The paper itself

Abstract

Age-related macular degeneration (AMD) is a leading cause of irreversible central vision loss in the elderly. Genetic factors contributing to AMD include single nucleotide polymorphisms (SNPs) in immune-related genes including CFH, C2, CFI, C9, and C3, thus implicating these pathways in AMD pathogenesis. MicroRNAs (miRNAs) are powerful regulators of gene expression and execute this function by binding to the 3' untranslated region (3'UTR) of target mRNAs, leading to mRNA degradation. In this study, we searched for the possible association of SNPs in the 3'UTR region of IL-17A, a gene implicated in AMD pathogenesis without any previous SNP association with AMD. Using two independent sample cohorts of Caucasian subjects, six SNPs in the IL-17A 3'-UTR were selected for genotyping based on bioinformatic predictions of the SNP effect on microRNA binding. The SNP rs7747909 was found to be associated with AMD (P < 0.05) in the NEI cohort, using a dominant model logistic regression. Luciferase reporter gene assays and RNA electrophoretic mobility shift assays were performed using ARPE-19 cells to confirm the preferential binding of microRNAs to the major allele of the SNP. Our findings support the hypothesis that microRNA-mediated gene dysregulation may play a role in the pathogenesis of AMD.

Indexed as

3' Untranslated RegionsGenetic Predisposition to DiseaseRNA InterferenceAgedAged, 80 and overAllelesCase-Control StudiesEpistasis, GeneticFemaleGenetic Association StudiesHumansInterleukin-17Linkage DisequilibriumMacular DegenerationMaleMicroRNAs3' Untranslated RegionsIL17A protein, humanInterleukin-17MicroRNAsMIRN-4480 microRNA, humanage-related macular degenerationepigeneticsgeneticsIL-17AinflammationmicroRNASNPs

Identifiers

PMID26765636
PMCPMC4714768
OpenAlexW1642039664

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.