Evidence map›Paper›PMID 26763881›Full record

ArticleJournal of human genetics2016

Genome-wide association study of serum lipids confirms previously reported associations as well as new associations of common SNPs within PCSK7 gene with triglyceride.

Makoto Kurano, Kazuhisa Tsukamoto, Shigeo Kamitsuji, Naoyuki Kamatani, Masumi Hara, Toshio Ishikawa, Bong-Jo Kim, Sanghoon Moon, Young Jin Kim, Tamio Teramoto

Abstract read
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Article in Journal of human genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
6.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 45 citations in OpenAlex.

  1. Trial
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  4. Review
  5. Apolipoprotein D modulates lipid mediators and osteopontin in an anti-inflammatory direction.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2023
    Article
  6. Can PCSK7 be A New Pharmaceutical Target?Journal of atherosclerosis and thrombosis · 2022
    Article
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  18. Journal of lipid research · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Makoto KuranoDepartment of Clinical Laboratory Medicine, Graduate School of Medicine, University of Tokyo, Tokyo, Japan.
Kazuhisa TsukamotoDepartment of Metabolism, Diabetes and Nephrology, Aizu Medical Center, Fukushima Medical University, Fukushima, Japan.
Shigeo KamitsujiStaGen, Statistical Genetics Analysis Division, Tokyo, Japan.
Naoyuki KamataniStaGen, Statistical Genetics Analysis Division, Tokyo, Japan.
Masumi HaraDepartment of Medicine IV, Mizonokuchi Hospital, Teikyo University School of Medicine, Kawasaki, Japan.
Toshio IshikawaDepartment of Internal Medicine, Teikyo University School of Medicine, Tokyo, Japan.
Bong-Jo KimDivision of Structural and Functional Genomics, Center for Genome Science, Korea National Institute of Health, Chungcheongbuk-do, Korea.
Sanghoon MoonDivision of Structural and Functional Genomics, Center for Genome Science, Korea National Institute of Health, Chungcheongbuk-do, Korea.
Young Jin KimDivision of Structural and Functional Genomics, Center for Genome Science, Korea National Institute of Health, Chungcheongbuk-do, Korea.
Tamio TeramotoDepartment of Internal Medicine, Teikyo University School of Medicine, Tokyo, Japan.
Korea National Institute of Health · KRTeikyo University · JPStaGen (Japan) · JPFukushima Medical University · JPThe University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Previous reports including genome-wide association studies (GWASs) have described associations of serum lipids with genomic variations. In the present study, we examined the association of ∼2.5 million single-nucleotide polymorphisms (SNPs) from 3041 Japanese healthy volunteers obtained from the Japan Pharmacogenomics Data Science Consortium (JPDSC) database with serum lipids. We confirmed the previously reported associations of 14 SNPs in 5 regions for low-density lipoprotein (LDL) cholesterol, 23 SNPs in 12 regions for high-density lipoprotein (HDL) cholesterol, 16 SNPs in 6 regions for triglyceride and 5 SNPs in 1 region for phospholipid. Furthermore, we identified 16 possible novel candidate genes associated with LDL cholesterol, HDL cholesterol or triglycerides, where SNPs had P-values of <1 × 10(-5). Further replication analyses of these genes with Korean data revealed significant associations of SNPs located within the PCSK7 gene and triglyceride (Pmeta=7.98 × 10(-9) and 1.91 × 10(-8) for rs508487 and rs236911, respectively). These associations remained significant even by the conditional analysis adjusting for three neighboring variations associated with triglyceride. Our present data suggest that PCSK7 as well as PCSK9 may be associated with lipids, especially triglyceride, and may serve as a candidate for a new drug target to treat lipid abnormality syndromes.

Indexed as

Genome-Wide Association StudyPolymorphism, Single NucleotideFemaleGenotypeHealthy VolunteersHumansLipidsMalePhenotypePopulation SurveillanceSubtilisinsTriglyceridesLipidsPCSK7 protein, humanSubtilisinsTriglycerides

Identifiers

PMID26763881
OpenAlexW2235517919

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.