Evidence map›Paper›PMID 26762979›Full record

ArticleNucleic acids research2016

Chi hotspots trigger a conformational change in the helicase-like domain of AddAB to activate homologous recombination.

Neville S Gilhooly, Carolina Carrasco, Benjamin Gollnick, Martin Wilkinson, Dale B Wigley, Fernando Moreno-Herrero, Mark S Dillingham

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Neville S GilhoolySchool of Biochemistry, University of Bristol, Bristol BS8 1TD, UK.
Carolina CarrascoDepartment of Macromolecular Structures, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Cientificas, 28049 Cantoblanco, Madrid, Spain.
Benjamin GollnickDepartment of Macromolecular Structures, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Cientificas, 28049 Cantoblanco, Madrid, Spain.ORCID http://orcid.org/0000-0001-6476-4614
Martin WilkinsonInstitute of Cancer Research, Chester Beatty Laboratories, 237 Fulham Road, London SW3 6JB, UK Section of Structural Biology, Department of Medicine, Imperial College London, South Kensington Campus, London SW7 2AZ, UK.
Dale B WigleyInstitute of Cancer Research, Chester Beatty Laboratories, 237 Fulham Road, London SW3 6JB, UK Section of Structural Biology, Department of Medicine, Imperial College London, South Kensington Campus, London SW7 2AZ, UK.
Fernando Moreno-HerreroDepartment of Macromolecular Structures, Centro Nacional de Biotecnología, Consejo Superior de Investigaciones Cientificas, 28049 Cantoblanco, Madrid, Spain.
Mark S DillinghamSchool of Biochemistry, University of Bristol, Bristol BS8 1TD, UK mark.dillingham@bristol.ac.uk.
Centro Nacional de Biotecnología · ESInstitute of Cancer Research · GBAt Bristol · GBUniversity of Bristol · GB

Funding

Transgenic Mouse and Biobank CoreP01CA095616 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI DEPINHO, RONALD ANTHONY · 2003 to 2012
$20.3M
Biotechnology and Biological Sciences Research CouncilNCI NIH HHS P01 CA095616Wellcome Trust 100401Wellcome Trust 100401/Z/12/Z
6 · The paper itself

Abstract

In bacteria, the repair of double-stranded DNA breaks is modulated by Chi sequences. These are recognised by helicase-nuclease complexes that process DNA ends for homologous recombination. Chi activates recombination by changing the biochemical properties of the helicase-nuclease, transforming it from a destructive exonuclease into a recombination-promoting repair enzyme. This transition is thought to be controlled by the Chi-dependent opening of a molecular latch, which enables part of the DNA substrate to evade degradation beyond Chi. Here, we show that disruption of the latch improves Chi recognition efficiency and stabilizes the interaction of AddAB with Chi, even in mutants that are impaired for Chi binding. Chi recognition elicits a structural change in AddAB that maps to a region of AddB which resembles a helicase domain, and which harbours both the Chi recognition locus and the latch. Mutation of the latch potentiates the change and moderately reduces the duration of a translocation pause at Chi. However, this mutant displays properties of Chi-modified AddAB even in the complete absence of bona fide hotspot sequences. The results are used to develop a model for AddAB regulation in which allosteric communication between Chi binding and latch opening ensures quality control during recombination hotspot recognition.

Indexed as

Recombinational DNA RepairBacillus subtilisBacterial ProteinsDNA, BacterialDNA Breaks, Double-StrandedDNA HelicasesExodeoxyribonucleasesGene ExpressionModels, MolecularMutationProtein Structure, SecondaryProtein Structure, TertiaryAddAB enzymeBacterial ProteinsDNA, BacterialDNA HelicasesExodeoxyribonucleases

Identifiers

PMID26762979
PMCPMC4824097
OpenAlexW2232707840

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.