Evidence map›Paper›PMID 26762975›Full record

ArticleNucleic acids research2016

Structural basis of nucleic acid recognition by FK506-binding protein 25 (FKBP25), a nuclear immunophilin.

Ajit Prakash, Joon Shin, Sreekanth Rajan, Ho Sup Yoon

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 33 citations in OpenAlex.

  1. Probing the dark energy in the functional protein universe.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Structural insights intoFrontiers in cellular and infection microbiology · 2022
    Review
  6. Article
  7. Esterase D stabilizes FKBP25 to suppress mTORC1.Cellular & molecular biology letters · 2021
    Article
  8. Mass Spectrometry-Based Redox and Protein Profiling of Failing Human Hearts.International journal of molecular sciences · 2021
    Article
  9. FKBP25 Regulates Meiotic Apparatus During Mouse Oocyte Maturation.Frontiers in cell and developmental biology · 2021
    Article
  10. Article
  11. FKBP25 participates in DNA double-strand break repair.Biochemistry and cell biology = Biochimie et biologie cellulaire · 2020
    Article
  12. Review
  13. Article
  14. FKBP Ligands-Where We Are and Where to Go?Frontiers in pharmacology · 2018
    Review
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Ajit PrakashSchool of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, 637551, Singapore.
Joon ShinSchool of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, 637551, Singapore.
Sreekanth RajanSchool of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, 637551, Singapore.
Ho Sup YoonSchool of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, 637551, Singapore Department of Genetic Engineering, College of Life Sciences, Kyung Hee University Yongin-si, Gyeonggi-do 446-701, Republic of Korea hsyoon@ntu.edu.sg.
Nanyang Technological University · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The nuclear immunophilin FKBP25 interacts with chromatin-related proteins and transcription factors and is suggested to interact with nucleic acids. Currently the structural basis of nucleic acid binding by FKBP25 is unknown. Here we determined the nuclear magnetic resonance (NMR) solution structure of full-length human FKBP25 and studied its interaction with DNA. The FKBP25 structure revealed that the N-terminal helix-loop-helix (HLH) domain and C-terminal FK506-binding domain (FKBD) interact with each other and that both of the domains are involved in DNA binding. The HLH domain forms major-groove interactions and the basic FKBD loop cooperates to form interactions with an adjacent minor-groove of DNA. The FKBP25-DNA complex model, supported by NMR and mutational studies, provides structural and mechanistic insights into the nuclear immunophilin-mediated nucleic acid recognition.

Indexed as

Base SequenceBinding SitesCloning, MolecularDNAEscherichia coliGene ExpressionHumansImmunophilinsMolecular Docking SimulationMolecular Sequence DataNuclear Magnetic Resonance, BiomolecularProtein BindingProtein Interaction Domains and MotifsProtein Structure, SecondaryRecombinant ProteinsTacrolimus Binding ProteinsDNAFKBP3 protein, humanImmunophilinsRecombinant ProteinsTacrolimus Binding ProteinsYY1 protein, humanYY1 Transcription Factor

Identifiers

PMID26762975
PMCPMC4824100
OpenAlexW2236176448

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.