Evidence map›Paper›PMID 26762934›Full record

ArticleEnvironmental science and pollution research international2016

Carbon amendment and soil depth affect the distribution and abundance of denitrifiers in agricultural soils.

M Barrett, M I Khalil, M M R Jahangir, C Lee, L M Cardenas, G Collins, K G Richards, V O'Flaherty

Abstract read
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Article in Environmental science and pollution research international, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
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  4. Article
  5. Article
  6. Bacterial Diversity and Interaction Networks ofFrontiers in plant science · 2020
    Article
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

M BarrettMicrobial Ecology Laboratory, Microbiology, School of Natural Sciences & Ryan Institute, National University of Ireland Galway, University Road, Galway, Ireland.
M I KhalilCrops, Environment and Land-Use Department, Teagasc, Johnstown Castle, Co., Wexford, Ireland.
M M R JahangirCrops, Environment and Land-Use Department, Teagasc, Johnstown Castle, Co., Wexford, Ireland.
C LeeSchool of Civil & Environmental Engineering Nanyang Technological University, Singapore, 639798, Singapore.
L M CardenasRothamsted Research, North Wyke, Okehampton, Devon, EX20 2SB, UK.
G CollinsMicrobial EcoEngineering Laboratory, Microbiology, School of Natural Sciences & Ryan Institute, National University of Ireland Galway, University Road, Galway, Ireland.
K G RichardsCrops, Environment and Land-Use Department, Teagasc, Johnstown Castle, Co., Wexford, Ireland.
V O'FlahertyMicrobial Ecology Laboratory, Microbiology, School of Natural Sciences & Ryan Institute, National University of Ireland Galway, University Road, Galway, Ireland. vincent.oflaherty@nuigalway.ie.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The nitrite reductase (nirS and nirK) and nitrous oxide reductase-encoding (nosZ) genes of denitrifying populations present in an agricultural grassland soil were quantified using real-time polymerase chain reaction (PCR) assays. Samples from three separate pedological depths at the chosen site were investigated: horizon A (0-10 cm), horizon B (45-55 cm), and horizon C (120-130 cm). The effect of carbon addition (treatment 1, control; treatment 2, glucose-C; treatment 3, dissolved organic carbon (DOC)) on denitrifier gene abundance and N2O and N2 fluxes was determined. In general, denitrifier abundance correlated well with flux measurements; nirS was positively correlated with N2O, and nosZ was positively correlated with N2 (P < 0.03). Denitrifier gene copy concentrations per gram of soil (GCC) varied in response to carbon type amendment (P < 0.01). Denitrifier GCCs were high (ca. 10(7)) and the bac:nirK, bac:nirS, bac:nir (T) , and bac:nosZ ratios were low (ca. 10(-1)/10) in horizon A in all three respective treatments. Glucose-C amendment favored partial denitrification, resulting in higher nir abundance and higher N2O fluxes compared to the control. DOC amendment, by contrast, resulted in relatively higher nosZ abundance and N2 emissions, thus favoring complete denitrification. We also noted soil depth directly affected bacterial, archaeal, and denitrifier abundance, possibly due to changes in soil carbon availability with depth.

Indexed as

AgricultureBacteriaCarbonDenitrificationGrasslandNitrite ReductasesNitrogenNitrous OxideOxidoreductasesReal-Time Polymerase Chain ReactionSoilSoil MicrobiologyCarbonNitrite ReductasesNitrogenNitrous Oxidenitrous oxide reductaseOxidoreductasesSoilDenitrificationN2O/N2 emissionsnirKnirSnosZSubsoil

Identifiers

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.