Evidence map›Paper›PMID 26758766›Full record

ArticleScientific reports2016

Analysis of a four generation family reveals the widespread sequence-dependent maintenance of allelic DNA methylation in somatic and germ cells.

Aifa Tang, Yi Huang, Zesong Li, Shengqing Wan, Lisha Mou, Guangliang Yin, Ning Li, Jun Xie, Yudong Xia, Xianxin Li and 13 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Linking inter-individual variability to endocrine disruptors: insights for epigenetic inheritance.Mammalian genome : official journal of the International Mammalian Genome Society · 2018
    Article
  6. Article
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 6 institutions in 2 countries.

Aifa TangShenzhen Key Laboratory of Genitourinary Tumor, National-Regional Key Engineering Technology Laboratory for Clinical Application of Cancer Genomics, Shenzhen Second People's Hospital, the First Affiliated Hospital of Shenzhen University, Shenzhen 518035, China.
Yi HuangShenzhen Key Laboratory of Genitourinary Tumor, National-Regional Key Engineering Technology Laboratory for Clinical Application of Cancer Genomics, Shenzhen Second People's Hospital, the First Affiliated Hospital of Shenzhen University, Shenzhen 518035, China.
Zesong LiShenzhen Key Laboratory of Genitourinary Tumor, National-Regional Key Engineering Technology Laboratory for Clinical Application of Cancer Genomics, Shenzhen Second People's Hospital, the First Affiliated Hospital of Shenzhen University, Shenzhen 518035, China.
Shengqing WanLuohu People's Hospital, Shezhen 518001, China.
Lisha MouShenzhen Key Laboratory of Genitourinary Tumor, National-Regional Key Engineering Technology Laboratory for Clinical Application of Cancer Genomics, Shenzhen Second People's Hospital, the First Affiliated Hospital of Shenzhen University, Shenzhen 518035, China.
Guangliang YinBGI-Shenzhen, Shenzhen 518083, China.
Ning LiBGI-Shenzhen, Shenzhen 518083, China.
Jun XieGuangdong and Shenzhen Key Laboratory of Male Reproductive Medicine and Genetics, Institute of Urology, Peking University Shenzhen Hospital, Shenzhen PKU-HKUST Medical Center, Shenzhen 518036, China.
Yudong XiaBGI-Shenzhen, Shenzhen 518083, China.
Xianxin LiGuangdong and Shenzhen Key Laboratory of Male Reproductive Medicine and Genetics, Institute of Urology, Peking University Shenzhen Hospital, Shenzhen PKU-HKUST Medical Center, Shenzhen 518036, China.
Liya LuoShenzhen Key Laboratory of Genitourinary Tumor, National-Regional Key Engineering Technology Laboratory for Clinical Application of Cancer Genomics, Shenzhen Second People's Hospital, the First Affiliated Hospital of Shenzhen University, Shenzhen 518035, China.
Junwen ZhangGuangdong and Shenzhen Key Laboratory of Male Reproductive Medicine and Genetics, Institute of Urology, Peking University Shenzhen Hospital, Shenzhen PKU-HKUST Medical Center, Shenzhen 518036, China.
Shen ChenGuangdong and Shenzhen Key Laboratory of Male Reproductive Medicine and Genetics, Institute of Urology, Peking University Shenzhen Hospital, Shenzhen PKU-HKUST Medical Center, Shenzhen 518036, China.
Song WuShenzhen Key Laboratory of Genitourinary Tumor, National-Regional Key Engineering Technology Laboratory for Clinical Application of Cancer Genomics, Shenzhen Second People's Hospital, the First Affiliated Hospital of Shenzhen University, Shenzhen 518035, China.
Jihua SunBGI-Shenzhen, Shenzhen 518083, China.
Xiaojuan SunShenzhen Key Laboratory of Genitourinary Tumor, National-Regional Key Engineering Technology Laboratory for Clinical Application of Cancer Genomics, Shenzhen Second People's Hospital, the First Affiliated Hospital of Shenzhen University, Shenzhen 518035, China.
Zhimao JiangGuangdong and Shenzhen Key Laboratory of Male Reproductive Medicine and Genetics, Institute of Urology, Peking University Shenzhen Hospital, Shenzhen PKU-HKUST Medical Center, Shenzhen 518036, China.
Jing ChenGuangdong and Shenzhen Key Laboratory of Male Reproductive Medicine and Genetics, Institute of Urology, Peking University Shenzhen Hospital, Shenzhen PKU-HKUST Medical Center, Shenzhen 518036, China.
Yingrui LiBGI-Shenzhen, Shenzhen 518083, China.
Jian WangBGI-Shenzhen, Shenzhen 518083, China.
Jun WangBGI-Shenzhen, Shenzhen 518083, China.
Zhiming CaiShenzhen Key Laboratory of Genitourinary Tumor, National-Regional Key Engineering Technology Laboratory for Clinical Application of Cancer Genomics, Shenzhen Second People's Hospital, the First Affiliated Hospital of Shenzhen University, Shenzhen 518035, China.
Yaoting GuiGuangdong and Shenzhen Key Laboratory of Male Reproductive Medicine and Genetics, Institute of Urology, Peking University Shenzhen Hospital, Shenzhen PKU-HKUST Medical Center, Shenzhen 518036, China.
BGI Group (China) · CNUniversity of Hong Kong - Shenzhen Hospital · CNShenzhen Second People's Hospital · CNPeking University Shenzhen Hospital · CNShenzhen Luohu People's Hospital · CNWashington University in St. Louis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Differential methylation of the homologous chromosomes, a well-known mechanism leading to genomic imprinting and X-chromosome inactivation, is widely reported at the non-imprinted regions on autosomes. To evaluate the transgenerational DNA methylation patterns in human, we analyzed the DNA methylomes of somatic and germ cells in a four-generation family. We found that allelic asymmetry of DNA methylation was pervasive at the non-imprinted loci and was likely regulated by cis-acting genetic variants. We also observed that the allelic methylation patterns for the vast majority of the cis-regulated loci were shared between the somatic and germ cells from the same individual. These results demonstrated the interaction between genetic and epigenetic variations and suggested the possibility of widespread sequence-dependent transmission of DNA methylation during spermatogenesis.

Indexed as

AllelesDNA MethylationEpigenesis, GeneticFamilyCluster AnalysisComputational BiologyGenetic LociGenotypeGerm CellsHigh-Throughput Nucleotide SequencingHumansMaleMolecular Sequence AnnotationPedigreePolymorphism, Single NucleotideReproducibility of Results

Identifiers

PMID26758766
PMCPMC4713049
OpenAlexW2235944365

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.