Evidence map›Paper›PMID 26758466›Full record

ArticleThe Journal of general virology2016

In silico analyses of antigenicity and surface structure variation of an emerging porcine circovirus genotype 2b mutant, prevalent in southern China from 2013 to 2015.

Yang Zhan, Naidong Wang, Zhe Zhu, Zhanfeng Wang, Aibing Wang, Zhibang Deng, Yi Yang

Open access · hybridAbstract read
In one paragraph

Article in The Journal of general virology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
4.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Structure analysis of capsid protein of Porcine circovirus type 2 from pigs with systemic disease.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology]
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Yang ZhanResearch Center of Functional Proteomics, College of Veterinary Medicine, Hunan Agricultural University, Changsha, PRChina.
Naidong WangResearch Center of Functional Proteomics, College of Veterinary Medicine, Hunan Agricultural University, Changsha, PRChina.
Zhe ZhuResearch Center of Functional Proteomics, College of Veterinary Medicine, Hunan Agricultural University, Changsha, PRChina.
Zhanfeng WangResearch Center of Functional Proteomics, College of Veterinary Medicine, Hunan Agricultural University, Changsha, PRChina.
Aibing WangResearch Center of Functional Proteomics, College of Veterinary Medicine, Hunan Agricultural University, Changsha, PRChina.
Zhibang DengResearch Center of Functional Proteomics, College of Veterinary Medicine, Hunan Agricultural University, Changsha, PRChina.
Yi YangResearch Center of Functional Proteomics, College of Veterinary Medicine, Hunan Agricultural University, Changsha, PRChina.
Hunan Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Porcine circovirus type 2 (PCV2) is the pivotal pathogen causing porcine circovirus-associated diseases. In this study, 62 PCV2 isolates were identified from seven farms in southern China from 2013 to 2015 and phylogenetic trees were reconstructed based on whole-genome sequences or the cap gene. In this investigation, PCV2b was the main genotype in circulation throughout these farms. Furthermore, an emerging mutant (PCV2b-1C), isolated from PCV2-vaccinated farms, was the predominant strain prevalent on these farms. In addition, we isolated a new cluster that may represent evolution of the virus through recombination of PCV2b-1A/1B and PCV2b-1C. Finally, we discuss evidence that antigenicity and surface structure variation of the capsid resulted from mutation of the C-terminal loop (Loop CT) of the PCV2b-1C Cap in silico.

Indexed as

Genome, ViralAmino Acid SequenceAnimalsAntigens, ViralBiological EvolutionCapsid ProteinsChinaCircoviridae InfectionsCircovirusDNA, ViralGenetic VariationGenotypeModels, MolecularMolecular Sequence DataMutationPhylogenyAntigens, ViralCapsid ProteinsDNA, ViralViral Vaccines

Identifiers

PMID26758466
PMCPMC4854366
OpenAlexW2237048217

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.