Evidence map›Paper›PMID 26758304›Full record

ArticleEnvironmental science and pollution research international2016

Land use and soil type determine the presence of the pathogen Burkholderia pseudomallei in tropical rivers.

Olivier Ribolzi, Emma Rochelle-Newall, Sabine Dittrich, Yves Auda, Paul N Newton, Sayaphet Rattanavong, Michael Knappik, Bounsamai Soulileuth, Oloth Sengtaheuanghoung, David A B Dance and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Environmental science and pollution research international, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 47 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Using Land Runoff to Survey the Distribution and Genetic Diversity ofApplied and environmental microbiology · 2021
    Article
  11. Article
  12. Human Melioidosis.Clinical microbiology reviews · 2020
    Review
  13. Article
  14. Presence ofTropical medicine and infectious disease · 2019
    Article
  15. Article
  16. Article
  17. Article
  18. The Role of Climate in the Epidemiology of Melioidosis.Current tropical medicine reports · 2017
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Olivier RibolziGéosciences Environnement Toulouse (GET), UMR 5563, (IRD, CNRS, UPS), Université de Toulouse, UPS (OMP), CNRS, Toulouse, France. olivier.ribolzi@ird.fr.
Emma Rochelle-NewalliEES-Paris (IRD-UPMC-CNRS-INRA-UDD-UPEC), Sorbonne Universités, UPMC Univ Paris 06, Institut de Recherche pour le Développement (IRD), case 23, 4 place Jussieu, Paris cedex, 75252, France.
Sabine DittrichLao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao People's Democratic Republic.
Yves AudaGéosciences Environnement Toulouse (GET), UMR 5563, (IRD, CNRS, UPS), Université de Toulouse, UPS (OMP), CNRS, Toulouse, France.
Paul N NewtonLao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao People's Democratic Republic.
Sayaphet RattanavongLao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao People's Democratic Republic.
Michael KnappikLao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao People's Democratic Republic.
Bounsamai SoulileuthInstitute of Ecology and Environmental Science-Paris, Institut de Recherche pour le Développement (IRD), Vientiane, Lao People's Democratic Republic.
Oloth SengtaheuanghoungDepartment of Agricultural Land Management (DALaM), P.O. Box 4199, Ban Nogviengkham, Xaythany District, Vientiane, Lao People's Democratic Republic.
David A B DanceLao-Oxford-Mahosot Hospital-Wellcome Trust Research Unit, Microbiology Laboratory, Mahosot Hospital, Vientiane, Lao People's Democratic Republic.
Alain PierretInstitute of Ecology and Environmental Science-Paris, Institut de Recherche pour le Développement (IRD), Vientiane, Lao People's Democratic Republic.
University of Oxford · GBMahosot Hospital · LACentre National de la Recherche Scientifique · FRGéosciences Environnement Toulouse · FRUniversité Paris-Est Créteil · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Burkholderia pseudomallei is the bacterium that causes melioidosis in humans. While B. pseudomallei is known to be endemic in South East Asia (SEA), the occurrence of the disease in other parts of the tropics points towards a potentially large global distribution. We investigated the environmental factors that influence the presence (and absence) of B. pseudomallei in a tropical watershed in SEA. Our main objective was to determine whether there is a link between the presence of the organism in the hydrographic network and the upstream soil and land-use type. The presence of B. pseudomallei was determined using a specific quantitative real-time PCR assay following enrichment culture. Land use, soil, geomorphology, and environmental data were then analyzed using partial least squares discriminant analysis (PLSDA) to compare the B. pseudomallei positive and negative sites. Soil type in the surrounding catchment and turbidity had a strong positive influence on the presence (acrisols and luvisols) or absence (ferralsols) of B. pseudomallei. Given the strong apparent links between soil characteristics, water turbidity, and the presence/absence of B. pseudomallei, actions to raise public awareness about factors increasing the risk of exposure should be undertaken in order to reduce the incidence of melioidosis in regions of endemicity.

Indexed as

SoilTropical ClimateBurkholderia pseudomalleiHumansReal-Time Polymerase Chain ReactionRiversSoil MicrobiologySoilAcrisolsFerralsolsGeographical information system (GIS)MelioidosisPartial least squares discriminant analysis (PLSDA)South East AsiaTurbidity of river waterWatershed

Identifiers

PMID26758304
PMCPMC4846699
OpenAlexW2238878925

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.