Evidence map›Paper›PMID 26758088›Full record

ArticleScientific reports2016

Metabolic traits of an uncultured archaeal lineage--MSBL1--from brine pools of the Red Sea.

Romano Mwirichia, Intikhab Alam, Mamoon Rashid, Manikandan Vinu, Wail Ba-Alawi, Allan Anthony Kamau, David Kamanda Ngugi, Markus Göker, Hans-Peter Klenk, Vladimir Bajic and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 70 citations in OpenAlex.

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  7. Ancestral archaea expanded the genetic code with pyrrolysine.The Journal of biological chemistry · 2022
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  10. Unconventional genetic code systems in archaea.Frontiers in microbiology · 2022
    Review
  11. Progress and Challenges in Studying the Ecophysiology of Archaea.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
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  15. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 3 countries.

Romano MwirichiaRed Sea Research Center, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
Intikhab AlamComputational Bioscience Research Center, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
Mamoon RashidRed Sea Research Center, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
Manikandan VinuRed Sea Research Center, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
Wail Ba-AlawiComputational Bioscience Research Center, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
Allan Anthony KamauComputational Bioscience Research Center, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
David Kamanda NgugiRed Sea Research Center, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
Markus GökerGerman Collection for Microorganisms and Cell Cultures GmbH (DSMZ), Inhoffenstraße 7b, 38124 Braunschweig, Germany.
Hans-Peter KlenkSchool of Biology, Newcastle University, Newcastle upon Tyne, United Kingdom.
Vladimir BajicComputational Bioscience Research Center, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
Ulrich StinglRed Sea Research Center, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.
King Abdullah University of Science and Technology · SALeibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures · DENewcastle University · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The candidate Division MSBL1 (Mediterranean Sea Brine Lakes 1) comprises a monophyletic group of uncultured archaea found in different hypersaline environments. Previous studies propose methanogenesis as the main metabolism. Here, we describe a metabolic reconstruction of MSBL1 based on 32 single-cell amplified genomes from Brine Pools of the Red Sea (Atlantis II, Discovery, Nereus, Erba and Kebrit). Phylogeny based on rRNA genes as well as conserved single copy genes delineates the group as a putative novel lineage of archaea. Our analysis shows that MSBL1 may ferment glucose via the Embden-Meyerhof-Parnas pathway. However, in the absence of organic carbon, carbon dioxide may be fixed via the ribulose bisphosphate carboxylase, Wood-Ljungdahl pathway or reductive TCA cycle. Therefore, based on the occurrence of genes for glycolysis, absence of the core genes found in genomes of all sequenced methanogens and the phylogenetic position, we hypothesize that the MSBL1 are not methanogens, but probably sugar-fermenting organisms capable of autotrophic growth. Such a mixotrophic lifestyle would confer survival advantage (or possibly provide a unique narrow niche) when glucose and other fermentable sugars are not available.

Indexed as

Energy MetabolismQuantitative Trait, HeritableSaltsArchaeaBiological TransportCarbohydrate MetabolismGenome, ArchaealGenomicsGluconeogenesisGlycolysisIndian OceanPhylogenyRNA, Ribosomal, 16SSequence Analysis, DNAStress, PhysiologicalbrineRNA, Ribosomal, 16SSalts

Identifiers

PMID26758088
PMCPMC4725937
OpenAlexW2232707089

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.