Evidence map›Paper›PMID 26757821›Full record

ArticleThe Journal of biological chemistry2016

Novel Features of Eukaryotic Photosystem II Revealed by Its Crystal Structure Analysis from a Red Alga.

Hideo Ago, Hideyuki Adachi, Yasufumi Umena, Takayoshi Tashiro, Keisuke Kawakami, Nobuo Kamiya, Lirong Tian, Guangye Han, Tingyun Kuang, Zheyi Liu and 5 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
8.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 122 citations in OpenAlex.

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  13. Structure ofeLife · 2023
    Article
  14. Review
  15. Iron Deficiency Promotes the Lack of Photosynthetic CytochromeInternational journal of molecular sciences · 2022
    Article
  16. Review
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  19. High-resolution cryo-electron microscopy structure of photosystem II from the mesophilic cyanobacterium,Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 2 countries.

Hideo AgoFrom the RIKEN SPring-8 Center, Hyogo 679-5148, Japan.
Hideyuki Adachithe Photosynthesis Research Center, Graduate School of Natural Science and Technology/Faculty of Science, Okayama University, Okayama 700-8530, Japan.
Yasufumi Umenathe Osaka City University Advanced Research Institute for Natural Science and Technology (OCARNA), Osaka City University, 3-3-138 Sugimoto, Sumiyoshi, Osaka 558-8585, Japan,; the Precursory Research for Embryonic Science and Technology (PRESTO), Japan Science and Technology Agency, Tokyo 102-0076, Japan.
Takayoshi Tashirothe Department of Chemistry, Graduate School of Science, Osaka City University, Sumiyoshi, Osaka 558-8585, Japan.
Keisuke Kawakamithe Osaka City University Advanced Research Institute for Natural Science and Technology (OCARNA), Osaka City University, 3-3-138 Sugimoto, Sumiyoshi, Osaka 558-8585, Japan.
Nobuo Kamiyathe Osaka City University Advanced Research Institute for Natural Science and Technology (OCARNA), Osaka City University, 3-3-138 Sugimoto, Sumiyoshi, Osaka 558-8585, Japan,; the Department of Chemistry, Graduate School of Science, Osaka City University, Sumiyoshi, Osaka 558-8585, Japan.
Lirong Tianthe Photosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China.
Guangye Hanthe Photosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China.
Tingyun Kuangthe Photosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China.
Zheyi Liuthe Key Laboratory of Separation Sciences for Analytical Chemistry, National Chromatographic R&A Center, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China and.
Fangjun Wangthe Key Laboratory of Separation Sciences for Analytical Chemistry, National Chromatographic R&A Center, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China and.
Hanfa Zouthe Key Laboratory of Separation Sciences for Analytical Chemistry, National Chromatographic R&A Center, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China and.
Isao Enamithe Department of Biology, Faculty of Science, Tokyo University of Science, Shinjuku-ku, Tokyo 162-8601, Japan.
Masashi MiyanoFrom the RIKEN SPring-8 Center, Hyogo 679-5148, Japan.
Jian-Ren Shenthe Photosynthesis Research Center, Graduate School of Natural Science and Technology/Faculty of Science, Okayama University, Okayama 700-8530, Japan,; the Photosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China,. Electronic address: shen@cc.okayama-u.ac.jp.
Osaka City University · JPChinese Academy of Sciences · CNDalian Institute of Chemical Physics · CNOkayama University · JPSPring-8 · JPInstitute of Botany · CNTokyo University of Science · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Photosystem II (PSII) catalyzes light-induced water splitting, leading to the evolution of molecular oxygen indispensible for life on the earth. The crystal structure of PSII from cyanobacteria has been solved at an atomic level, but the structure of eukaryotic PSII has not been analyzed. Because eukaryotic PSII possesses additional subunits not found in cyanobacterial PSII, it is important to solve the structure of eukaryotic PSII to elucidate their detailed functions, as well as evolutionary relationships. Here we report the structure of PSII from a red alga Cyanidium caldarium at 2.76 Å resolution, which revealed the structure and interaction sites of PsbQ', a unique, fourth extrinsic protein required for stabilizing the oxygen-evolving complex in the lumenal surface of PSII. The PsbQ' subunit was found to be located underneath CP43 in the vicinity of PsbV, and its structure is characterized by a bundle of four up-down helices arranged in a similar way to those of cyanobacterial and higher plant PsbQ, although helices I and II of PsbQ' were kinked relative to its higher plant counterpart because of its interactions with CP43. Furthermore, two novel transmembrane helices were found in the red algal PSII that are not present in cyanobacterial PSII; one of these helices may correspond to PsbW found only in eukaryotic PSII. The present results represent the first crystal structure of PSII from eukaryotic oxygenic organisms, which were discussed in comparison with the structure of cyanobacterial PSII.

Indexed as

Amino Acid SequenceCrystallography, X-RayMolecular Sequence DataPhotosystem II Protein ComplexPlant ProteinsProtein ConformationProtein MultimerizationRhodophytaSequence AlignmentPhotosystem II Protein ComplexPlant Proteinscrystallographycrystal structurecyanobacteriaelectron transfer complexmembrane proteinphotosynthesisphotosystem IIx-ray crystallography

Identifiers

PMID26757821
PMCPMC4786707
OpenAlexW2233908210

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.