Evidence map›Paper›PMID 26757490›Full record

ArticleMolecular plant pathology2016

A novel sweet potato potyvirus open reading frame (ORF) is expressed via polymerase slippage and suppresses RNA silencing.

Milton Untiveros, Allan Olspert, Katrin Artola, Andrew E Firth, Jan F Kreuze, Jari P T Valkonen

Open access · hybridAbstract read
In one paragraph

Article in Molecular plant pathology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
17.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 64 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. The 6-kilodalton peptide 1 in plant viruses of the family Potyviridae is a viroporin.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. AlkB RNA demethylase homologues and NMolecular plant pathology · 2022
    Article
  13. Molecular plant-microbe interactions : MPMI · 2022
    Article
  14. Review
  15. Article
  16. Article
  17. P1 ofJournal of virology · 2021
    Article
  18. The P1 Protein ofFrontiers in microbiology · 2021
    Article
  19. A Newly Identified Virus in the FamilyJournal of virology · 2020
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 4 countries.

Milton UntiverosDepartment of Agricultural Sciences, University of Helsinki, FI-00014, Helsinki, Finland.
Allan OlspertDepartment of Pathology, Division of Virology, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QP, UK.
Katrin ArtolaDepartment of Agricultural Sciences, University of Helsinki, FI-00014, Helsinki, Finland.
Andrew E FirthDepartment of Pathology, Division of Virology, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QP, UK.
Jan F KreuzeInternational Potato Center, Lima 12, Peru.ORCID 0000-0002-6116-9200
Jari P T ValkonenDepartment of Agricultural Sciences, University of Helsinki, FI-00014, Helsinki, Finland.
University of Helsinki · FIUniversity of Cambridge · GBInternational Potato Center · PE

Funding

Biotechnology and Biological Sciences Research Council BB/J007072/1Biotechnology and Biological Sciences Research Council BB/J015652/1Wellcome Trust 088789Wellcome Trust 106207
6 · The paper itself

Abstract

The single-stranded, positive-sense RNA genome of viruses in the genus Potyvirus encodes a large polyprotein that is cleaved to yield 10 mature proteins. The first three cleavage products are P1, HCpro and P3. An additional short open reading frame (ORF), called pipo, overlaps the P3 region of the polyprotein ORF. Four related potyviruses infecting sweet potato (Ipomoea batatas) are predicted to contain a third ORF, called pispo, which overlaps the 3' third of the P1 region. Recently, pipo has been shown to be expressed via polymerase slippage at a conserved GA6 sequence. Here, we show that pispo is also expressed via polymerase slippage at a GA6 sequence, with higher slippage efficiency (∼5%) than at the pipo site (∼1%). Transient expression of recombinant P1 or the 'transframe' product, P1N-PISPO, in Nicotiana benthamiana suppressed local RNA silencing (RNAi), but only P1N-PISPO inhibited short-distance movement of the silencing signal. These results reveal that polymerase slippage in potyviruses is not limited to pipo expression, but can be co-opted for the evolution and expression of further novel gene products.

Indexed as

RNA InterferenceAmino Acid MotifsAmino Acid SequenceBase SequenceDNA-Directed RNA PolymerasesGenes, SuppressorGenetic VectorsGenome, ViralGenomicsHigh-Throughput Nucleotide SequencingIpomoea batatasMutationOpen Reading FramesPeptidesPhenotypePolymorphism, Single NucleotideDNA-Directed RNA PolymerasesPeptidesRNA, ViralViral Proteinsframeshiftgene expressionoverlapping geneRNA silencing suppressionRNA virustranscriptional slippage

Identifiers

PMID26757490
PMCPMC4979677
OpenAlexW2411780855

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.