Evidence map›Paper›PMID 26756355›Full record

ArticleEpigenomics2016

Epigenetics of the myotonic dystrophy-associated DMPK gene neighborhood.

Lauren Buckley, Michelle Lacey, Melanie Ehrlich

Open access · greenAbstract read
In one paragraph

Article in Epigenomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Review
  3. Local Non-Coding Regulatory Elements in Muscular Dystrophies.International journal of molecular sciences · 2025
    Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Epigenetics of Myotonic Dystrophies: A Minireview.International journal of molecular sciences · 2021
    Review
  10. Article
  11. Neurology. Genetics · 2019
    Article
  12. Article
  13. Article
  14. Article
  15. CRISPR/Cas9-Induced (CTG⋅CAG)Molecular therapy : the journal of the American Society of Gene Therapy · 2017
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Lauren BuckleyHuman Genetics Program, Tulane University Health Sciences Center, New Orleans, LA 70112, USA.
Michelle LaceyTulane Cancer Center & Department of Mathematics, Tulane University, New Orleans, LA 70112, USA.
Melanie EhrlichHuman Genetics Program, Center for Bioinformatics & Genomics, Tulane Cancer Center, Tulane University Health Sciences Center, New Orleans, LA 70112, USA.
Tulane University · US

Funding

Mentoring a Cancer Genetics ProgramP20GM103518 · NIGMS · TULANE UNIVERSITY OF LOUISIANA · PI DEININGER, PRESCOTT L. · 2012 to 2013
$4.3M
NIGMS NIH HHS P20 GM103518NIGMS NIH HHS P20GM103518NINDS NIH HHS NS04885
6 · The paper itself

Abstract

aimIdentify epigenetic marks in the vicinity of DMPK (linked to myotonic dystrophy, DM1) that help explain tissue-specific differences in its expression. MATERIALS &

methodsAt DMPK and its flanking genes (DMWD, SIX5, BHMG1 and RSPH6A), we analyzed many epigenetic and transcription profiles from myoblasts, myotubes, skeletal muscle, heart and 30 nonmuscle samples.

resultsIn the DMPK gene neighborhood, muscle-associated DNA hypermethylation and hypomethylation, enhancer chromatin, and CTCF binding were seen. Myogenic DMPK hypermethylation correlated with high expression and decreased alternative promoter usage. Testis/sperm hypomethylation of BHMG1 and RSPH6A was associated with testis-specific expression. G-quadruplex (G4) motifs and sperm-specific hypomethylation were found near the DM1-linked CTG repeats within DMPK.

conclusionTissue-specific epigenetic features in DMPK and neighboring genes help regulate its expression. G4 motifs in DMPK DNA and RNA might contribute to DM1 pathology.

Indexed as

DNA MethylationCells, CulturedEpigenesis, GeneticGene Expression ProfilingGene Expression RegulationHomeodomain ProteinsHumansHuman Umbilical Vein Endothelial CellsMuscle CellsMyotonic DystrophyMyotonin-Protein KinaseOrgan SpecificityProteinsDMPK protein, humanDMWD protein, humanHomeodomain ProteinsMyotonin-Protein KinaseProteinsRSPH6A protein, humanSIX5 protein, humanalternative promotersCTCFDNA methylationenhancersG-quadruplexhistone modificationmusclemyotonic dystrophysperm DNAtestis

Identifiers

PMID26756355
PMCPMC4863877
OpenAlexW2235529123

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.