Evidence map›Paper›PMID 26755726›Full record

ArticleThe Journal of biological chemistry2016

Regulation of Transient Site-specific Copy Gain by MicroRNA.

Joshua C Black, Hailei Zhang, Jaegil Kim, Gad Getz, Johnathan R Whetstine

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 29 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. MicroRNAs: A Link between Mammary Gland Development and Breast Cancer.International journal of molecular sciences · 2022
    Review
  6. Article
  7. Mechanistic insights into KDM4A driven genomic instability.Biochemical Society transactions · 2021
    Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. JMJD2A sensitizes gastric cancer to chemotherapy by cooperating with CCDC8.Gastric cancer : official journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association · 2020
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Joshua C BlackFrom the Massachusetts General Hospital Cancer Center and Departments of Medicine and.
Hailei Zhangthe Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02142.
Jaegil Kimthe Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02142.
Gad Getzthe Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02142 Pathology, Harvard Medical School, Massachusetts 02129 and.
Johnathan R WhetstineFrom the Massachusetts General Hospital Cancer Center and Departments of Medicine and jwhetstine@hms.harvard.edu.
Broad Institute · USMassachusetts General Hospital · USHarvard University · US

Funding

The Cancer Genome Atlas Data Analysis CenterU24CA143845 · NCI · BROAD INSTITUTE, INC. · PI CHIN, LYNDA, GETZ, GAD A · 2009 to 2016
$16.0M
Understanding the Role of Histone Demethylases and Heterochromatin in Cell CycleR01GM097360 · NIGMS · RESEARCH INST OF FOX CHASE CAN CTR · PI WHETSTINE, JOHNATHAN R. · 2012 to 2020
$3.4M
PROTON THERAPY RESEARCH AND TREATMENT CENTERC06CA059267 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI GOITEIN, MICHAEL · 1992 to 1995
–
NCI NIH HHS C06 CA059267NCI NIH HHS CA059267NCI NIH HHS U24CA143845NIGMS NIH HHS R01 GM097360NIGMS NIH HHS R01GM097360
6 · The paper itself

Abstract

Intra-tumor copy number heterogeneity is commonly observed in cancer; however, the molecular mechanisms that contribute to heterogeneity remain poorly understood. Up-regulation of the histone demethylase KDM4A promotes transient site-specific copy gain (TSSG) in cells; therefore, uncovering how KDM4A levels are controlled is important for understanding the regulation of copy number heterogeneity. Here, we demonstrate that KDM4A is regulated by hsa-mir-23a-3p, hsa-mir-23b-3p, and hsa-mir-137. Altering expression of these microRNAs (miRNAs) regulates KDM4A-dependent TSSG. miRNA inhibition promoted copy gains and increased expression of the drug-resistant oncogene CKS1B, which was further substantiated in primary breast tumors. Consistent with increased CKS1B expression, miRNA inhibition reduced breast cancer cell sensitivity to cisplatin. Our data identify these miRNAs as regulators of TSSG and copy gains of a drug resistance gene.

Indexed as

Gene AmplificationGene Expression Regulation, NeoplasticBreast NeoplasmsCDC2-CDC28 KinasesCell Line, TumorFemaleHumansJumonji Domain-Containing Histone DemethylasesMicroRNAsCDC2-CDC28 KinasesCKS1B protein, humanJumonji Domain-Containing Histone DemethylasesKDM4A protein, humanMicroRNAsMIRN137 microRNA, humanMIRN23a microRNA, humanchromatincisplatinCKS1Bdrug resistancegenomic instabilityhistone demethylaseJMJD2AKDM4AmicroRNA (miRNA)TSSG

Identifiers

PMID26755726
PMCPMC4777823
OpenAlexW2233301873

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.